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Aliases for CACTIN-AS1 Gene

Subcategory (RNA class) for CACTIN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACTIN-AS1 Gene

  • CACTIN Antisense RNA 1 2 3
  • C19orf29 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Cactin Antisense RNA 1 4 5
  • C19orf29-AS1 3 4
  • C19orf29OS 3 4
  • Chromosome 19 Open Reading Frame 29 Opposite Strand 2
  • C19orf29 Antisense RNA 1 2

External Ids for CACTIN-AS1 Gene

Previous HGNC Symbols for CACTIN-AS1 Gene

  • C19orf29OS
  • C19orf29-AS1

Summaries for CACTIN-AS1 Gene

GeneCards Summary for CACTIN-AS1 Gene

CACTIN-AS1 (CACTIN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CACTIN-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACTIN-AS1 Gene

Genomics for CACTIN-AS1 Gene

GeneHancer (GH) Regulatory Elements for CACTIN-AS1 Gene

Promoters and enhancers for CACTIN-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I003605 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 603.5 +0.4 356 4.6 HDGF PKNOX1 ARNT SIN3A YBX1 ZNF2 POLR2B ZNF766 SP3 MCM5 CACTIN-AS1 TBXA2R ZNF77 CACTIN CCDC94 ENSG00000267030 ZNF555 ENSG00000267769 APBA3 GNA11
GH19I004246 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 57.8 +640.1 640085 2.2 CLOCK DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 MCM3 CCDC94 ENSG00000280247 CACTIN CACTIN-AS1 ENSG00000267769 ENSG00000267030 HDGFL2 PIAS4 APBA3 DPP9-AS1
GH19I003363 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 42.3 -239.5 -239510 8.1 HDGF SMAD1 ARNT YBX1 ZNF2 YY1 POLR2B ZNF213 ZNF143 ZNF263 NFIC CACTIN-AS1 CACTIN ZNF77 LMNB2 CCDC94 APBA3 PIAS4 ENSG00000267139 ZNF555
GH19I004398 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 39.3 +794.3 794326 6.8 MLX YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 CHAF1A SH3GL1 PIR37989 ENSG00000267769 CACTIN-AS1 UBXN6 ENSG00000267030 PTPRS APBA3 DPP9-AS1
GH19I004227 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 53.1 +622.2 622199 4.2 HDGF PKNOX1 SMAD1 YBX1 ZNF2 ZNF48 ZNF121 GLIS2 ARID2 ZNF207 EBI3 CACTIN CACTIN-AS1 ENSG00000267030 CCDC94 ENSG00000267769 APBA3 ENSG00000267138 DPP9-AS1 HDGFL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CACTIN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACTIN-AS1 Gene

Genomic Locations for CACTIN-AS1 Gene
chr19:3,607,247-3,613,930
(GRCh38/hg38)
Size:
6,684 bases
Orientation:
Plus strand
chr19:3,607,245-3,613,928
(GRCh37/hg19)

Genomic View for CACTIN-AS1 Gene

Genes around CACTIN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACTIN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACTIN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACTIN-AS1 Gene

Proteins for CACTIN-AS1 Gene

  • Protein details for CACTIN-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1I8-CAAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by CACTIN-AS1
    Protein Accession:
    Q8N1I8

    Protein attributes for CACTIN-AS1 Gene

    Size:
    211 amino acids
    Molecular mass:
    22698 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CACTIN-AS1 Gene

Post-translational modifications for CACTIN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACTIN-AS1 Gene

Domains & Families for CACTIN-AS1 Gene

Protein Domains for CACTIN-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CACTIN-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CACTIN-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CACTIN-AS1 Gene

Function for CACTIN-AS1 Gene

Phenotypes From GWAS Catalog for CACTIN-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACTIN-AS1 Gene

Localization for CACTIN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACTIN-AS1 Gene

Pathways & Interactions for CACTIN-AS1 Gene

SuperPathways for CACTIN-AS1 Gene

No Data Available

Interacting Proteins for CACTIN-AS1 Gene

Gene Ontology (GO) - Biological Process for CACTIN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACTIN-AS1 Gene

Drugs & Compounds for CACTIN-AS1 Gene

No Compound Related Data Available

Transcripts for CACTIN-AS1 Gene

mRNA/cDNA for CACTIN-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACTIN-AS1 Gene

CACTIN antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACTIN-AS1 Gene

No ASD Table

Relevant External Links for CACTIN-AS1 Gene

GeneLoc Exon Structure for
CACTIN-AS1
ECgene alternative splicing isoforms for
CACTIN-AS1

Expression for CACTIN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACTIN-AS1 Gene

Protein differential expression in normal tissues from HIPED for CACTIN-AS1 Gene

This gene is overexpressed in Plasma (50.0) and Urine (19.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CACTIN-AS1 Gene



Protein tissue co-expression partners for CACTIN-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for CACTIN-AS1 Gene:

Hs.719726
genes like me logo Genes that share expression patterns with CACTIN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACTIN-AS1 Gene

Orthologs for CACTIN-AS1 Gene

Evolution for CACTIN-AS1 Gene

ENSEMBL:
Gene Tree for CACTIN-AS1 (if available)
TreeFam:
Gene Tree for CACTIN-AS1 (if available)

No data available for Orthologs for CACTIN-AS1 Gene

Paralogs for CACTIN-AS1 Gene

No data available for Paralogs for CACTIN-AS1 Gene

Variants for CACTIN-AS1 Gene

Sequence variations from dbSNP and Humsavar for CACTIN-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000212986 -- 3,606,886(+) G/C upstream_transcript_variant
rs1000228476 -- 3,610,921(+) G/A intron_variant
rs1000714302 -- 3,607,225(+) G/T upstream_transcript_variant
rs1000774915 -- 3,611,498(+) C/T intron_variant
rs1000967918 -- 3,611,655(+) C/G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CACTIN-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv470114 CNV loss 18288195
nsv833713 CNV loss 17160897
nsv953948 CNV deletion 24416366

Additional Variant Information for CACTIN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACTIN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACTIN-AS1 Gene

Disorders for CACTIN-AS1 Gene

Additional Disease Information for CACTIN-AS1

No disorders were found for CACTIN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACTIN-AS1 Gene

Publications for CACTIN-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58

Products for CACTIN-AS1 Gene

Sources for CACTIN-AS1 Gene

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