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Aliases for CACTIN-AS1 Gene

Subcategory (RNA class) for CACTIN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACTIN-AS1 Gene

  • CACTIN Antisense RNA 1 2 3
  • C19orf29 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Cactin Antisense RNA 1 4 5
  • C19orf29-AS1 3 4
  • C19orf29OS 3 4
  • Chromosome 19 Open Reading Frame 29 Opposite Strand 2
  • C19orf29 Antisense RNA 1 2

External Ids for CACTIN-AS1 Gene

Previous HGNC Symbols for CACTIN-AS1 Gene

  • C19orf29OS
  • C19orf29-AS1

Summaries for CACTIN-AS1 Gene

GeneCards Summary for CACTIN-AS1 Gene

CACTIN-AS1 (CACTIN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CACTIN-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACTIN-AS1 Gene

Genomics for CACTIN-AS1 Gene

Regulatory Elements for CACTIN-AS1 Gene

Enhancers for CACTIN-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H004574 2 FANTOM5 Ensembl ENCODE dbSUPER 41.8 +968.2 968237 2.5 HDGF PKNOX1 ARNT ARID4B FEZF1 ZNF2 ZBTB7B ZNF143 ZNF548 FOS CACTIN CCDC94 CACTIN-AS1 APBA3 ENSG00000267030 TICAM1 ENSG00000269807 ENSG00000267769 DPP9-AS1 SH3GL1
GH19H003605 1.3 ENCODE dbSUPER 63.4 +0.4 357 4.6 HDGF PKNOX1 ARNT SIN3A YBX1 ZNF2 ZNF766 SP3 MCM5 ZNF662 CACTIN ZNF77 CACTIN-AS1 CCDC94 ENSG00000267030 ZNF555 ENSG00000267769 APBA3 GNA11 ZNF554
GH19H004246 1.2 ENCODE 67.8 +640.1 640086 2.2 DMAP1 YY1 SLC30A9 ZNF143 SP3 MCM3 NFYC ZC3H11A MEF2D SSRP1 CACTIN CACTIN-AS1 CCDC94 ENSG00000267030 ENSG00000267769 HDGFL2 PIAS4 APBA3 DPP9-AS1 LOC100287614
GH19H003363 1.9 FANTOM5 Ensembl ENCODE dbSUPER 42.3 -239.5 -239510 8.1 HDGF ARNT YBX1 ZNF2 YY1 ZNF143 SP3 MCM3 JUNB REST CACTIN-AS1 CACTIN ZNF77 CCDC94 PIAS4 ENSG00000267139 ZNF555 LMNB2 APBA3 SLC39A3
GH19H004049 1.9 FANTOM5 Ensembl ENCODE dbSUPER 41.2 +444.5 444486 5 HDGF FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS CACTIN-AS1 CACTIN APBA3 ENSG00000266959 LOC100287614 LOC105372244 DPP9-AS1 ENSG00000267030 ENSG00000267139 KDM4B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACTIN-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CACTIN-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000106083 -547 1001 YBX3 HDGF PKNOX1 RB1 SIN3A KLF17 GLIS2 SCRT2 KLF7 SP3

Genomic Locations for CACTIN-AS1 Gene

Genomic Locations for CACTIN-AS1 Gene
chr19:3,607,247-3,613,930
(GRCh38/hg38)
Size:
6,684 bases
Orientation:
Plus strand
chr19:3,607,245-3,613,928
(GRCh37/hg19)

Genomic View for CACTIN-AS1 Gene

Genes around CACTIN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACTIN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACTIN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACTIN-AS1 Gene

Proteins for CACTIN-AS1 Gene

  • Protein details for CACTIN-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1I8-CAAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by CACTIN-AS1
    Protein Accession:
    Q8N1I8

    Protein attributes for CACTIN-AS1 Gene

    Size:
    211 amino acids
    Molecular mass:
    22698 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CACTIN-AS1 Gene

Post-translational modifications for CACTIN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACTIN-AS1 Gene

Domains & Families for CACTIN-AS1 Gene

Protein Domains for CACTIN-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CACTIN-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CACTIN-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CACTIN-AS1 Gene

Function for CACTIN-AS1 Gene

Phenotypes From GWAS Catalog for CACTIN-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACTIN-AS1 Gene

Localization for CACTIN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACTIN-AS1 Gene

Pathways & Interactions for CACTIN-AS1 Gene

SuperPathways for CACTIN-AS1 Gene

No Data Available

Interacting Proteins for CACTIN-AS1 Gene

Gene Ontology (GO) - Biological Process for CACTIN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACTIN-AS1 Gene

Drugs & Compounds for CACTIN-AS1 Gene

No Compound Related Data Available

Transcripts for CACTIN-AS1 Gene

mRNA/cDNA for CACTIN-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACTIN-AS1 Gene

CACTIN antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACTIN-AS1 Gene

No ASD Table

Relevant External Links for CACTIN-AS1 Gene

GeneLoc Exon Structure for
CACTIN-AS1
ECgene alternative splicing isoforms for
CACTIN-AS1

Expression for CACTIN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACTIN-AS1 Gene

Protein differential expression in normal tissues from HIPED for CACTIN-AS1 Gene

This gene is overexpressed in Plasma (50.0) and Urine (19.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CACTIN-AS1 Gene



Protein tissue co-expression partners for CACTIN-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for CACTIN-AS1 Gene:

Hs.719726
genes like me logo Genes that share expression patterns with CACTIN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACTIN-AS1 Gene

Orthologs for CACTIN-AS1 Gene

Evolution for CACTIN-AS1 Gene

ENSEMBL:
Gene Tree for CACTIN-AS1 (if available)
TreeFam:
Gene Tree for CACTIN-AS1 (if available)

No data available for Orthologs for CACTIN-AS1 Gene

Paralogs for CACTIN-AS1 Gene

No data available for Paralogs for CACTIN-AS1 Gene

Variants for CACTIN-AS1 Gene

Sequence variations from dbSNP and Humsavar for CACTIN-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000212986 -- 3,606,886(+) CCGCT(C/G)TCTCT upstream-variant-2KB, utr-variant-5-prime
rs1000228476 -- 3,610,921(+) GGCTG(A/G)GCCAC intron-variant, utr-variant-3-prime
rs1000714302 -- 3,607,225(+) CGGGG(G/T)TCGCC upstream-variant-2KB, utr-variant-5-prime
rs1000774915 -- 3,611,498(+) GGCAC(C/T)GCCAA intron-variant, utr-variant-3-prime
rs1000967918 -- 3,611,655(+) GTGCT(C/G/T)GAAAG intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CACTIN-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv953948 CNV deletion 24416366
nsv833713 CNV loss 17160897
nsv470114 CNV loss 18288195

Relevant External Links for CACTIN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACTIN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACTIN-AS1 Gene

Disorders for CACTIN-AS1 Gene

Relevant External Links for CACTIN-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CACTIN-AS1

No disorders were found for CACTIN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACTIN-AS1 Gene

Publications for CACTIN-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 60

Products for CACTIN-AS1 Gene

Sources for CACTIN-AS1 Gene

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