Aliases for CACNG5 Gene
Aliases for CACNG5 Gene
External Ids for CACNG5 Gene
- HGNC: 1409
- Entrez Gene: 27091
- Ensembl: ENSG00000075429
- OMIM: 606405
- UniProtKB: Q9UF02
Previous GeneCards Identifiers for CACNG5 Gene
- GC17M063533
- GC17M066599
- GC17P065290
- GC17P065423
- GC17P062303
- GC17P064873
- GC17P060262
Summaries for CACNG5 Gene
-
The protein encoded by this gene is a type II transmembrane AMPA receptor regulatory protein (TARP). TARPs regulate both trafficking and channel gating of the AMPA receptors. This gene is part of a functionally diverse eight-member protein subfamily of the PMP-22/EMP/MP20 family and is located in a cluster with two family members, a type I TARP and a calcium channel gamma subunit. This gene is a susceptibility locus for schizophrenia and bipolar disorder. [provided by RefSeq, Dec 2010]
GeneCards Summary for CACNG5 Gene
CACNG5 (Calcium Voltage-Gated Channel Auxiliary Subunit Gamma 5) is a Protein Coding gene. Diseases associated with CACNG5 include schizophrenia. Among its related pathways are cGMP-PKG signaling pathway and Hypertrophic cardiomyopathy (HCM). GO annotations related to this gene include voltage-gated calcium channel activity and ion transmembrane transporter activity. An important paralog of this gene is CACNG2.
UniProtKB/Swiss-Prot for CACNG5 Gene
-
Regulates the gating properties of AMPA-selective glutamate receptors (AMPARs). Modulates their gating properties by accelerating their rates of activation, deactivation and desensitization. Displays subunit-specific AMPA receptor regulation. Shows specificity for GRIA1, GRIA4 and the long isoform of GRIA2. Thought to stabilize the calcium channel in an inactivated (closed) state (By similarity).
No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNG5 Gene
Genomics for CACNG5 Gene
Regulatory Elements for CACNG5 Gene
Enhancers for CACNG5 Gene
| GeneHancer Identifier | Score | Enhancer Sources | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Other Gene Targets for Enhancer |
|---|
Enhancers around CACNG5 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the CACNG5 gene promoter:
Regulatory Element Products
Genomic Location for CACNG5 Gene
- Chromosome:
- 17
- Start:
- 66,835,117 bp from pter
- End:
- 66,887,296 bp from pter
- Size:
- 52,180 bases
- Orientation:
- Plus strand
Genomic View for CACNG5 Gene
Genes around CACNG5 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q24.2 by Ensembl
- 17q24 by Entrez Gene
- 17q24 by HGNC
CACNG5 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CACNG5 Gene
Proteins for CACNG5 Gene
-
Protein details for CACNG5 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9UF02-CCG5_HUMAN
- Recommended name:
- Voltage-dependent calcium channel gamma-5 subunit
- Protein Accession:
- Q9UF02
- A8K2A6
- Q547R3
- Q8WXS7
- Q9UHM3
Protein attributes for CACNG5 Gene
- Size:
- 275 amino acids
- Molecular mass:
- 30903 Da
- Quaternary structure:
-
- The L-type calcium channel is composed of five subunits: alpha-1, alpha-2/delta, beta and gamma. Acts as an auxiliary subunit for AMPA-selective glutamate receptors (AMPARs). Found in a complex with GRIA1, GRIA2, GRIA3, GRIA4, CNIH2, CNIH3, CACNG2, CACNG3, CACNG4, CACNG7 and CACNG8. Interacts with GRIA1, GRIA2, GRIA3 and GRIA4 (By similarity).
Protein Expression for CACNG5 Gene
Post-translational modifications for CACNG5 Gene
Other Protein References for CACNG5 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for CACNG5
- Abcam antibodies for CACNG5 (Q9UF02)
- Invitrogen Antibodies for CACNG5
- antibodies-online Antibodies for CACNG5: See all 23
- GeneTex CACNG5 antibody for CACNG5
-
Santa Cruz Biotechnology (SCBT) Antibodies for CACNG5
Protein Products
-
OriGene Purified Proteins for CACNG5
- Search Origene for MassSpec and Protein Over-expression Lysates for CACNG5
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- Search GeneTex for Proteins for CACNG5
Assay Products
No data available for DME Specific Peptides for CACNG5 Gene
Domains & Families for CACNG5 Gene
Gene Families for CACNG5 Gene
Protein Domains for CACNG5 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for CACNG5 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9UF02- Family:
-
- Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily.
Function for CACNG5 Gene
Molecular function for CACNG5 Gene
- GENATLAS Biochemistry:
- calcium channel,voltage-dependent,gamma subunit 5
- UniProtKB/Swiss-Prot Function:
- Regulates the gating properties of AMPA-selective glutamate receptors (AMPARs). Modulates their gating properties by accelerating their rates of activation, deactivation and desensitization. Displays subunit-specific AMPA receptor regulation. Shows specificity for GRIA1, GRIA4 and the long isoform of GRIA2. Thought to stabilize the calcium channel in an inactivated (closed) state (By similarity).
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005245 | voltage-gated calcium channel activity | TAS | 10613843 |
| GO:0005515 | protein binding | IEA | -- |
Phenotypes for CACNG5 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for CACNG5 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CACNG5 gene
- Search ViGene Biosciences for CACNG5
CRISPR Products
-
OriGene CRISPR knockouts for CACNG5
-
Santa Cruz Biotechnology (SCBT) CRISPR for CACNG5
- GenScript: Design CRISPR guide RNA sequences for CACNG5
miRNA for CACNG5 Gene
- miRTarBase miRNAs that target CACNG5
miRNA Products
- Search ViGene Biosciences for CACNG5
Clone Products
- OriGene clones in human for CACNG5
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Cell Line Products
-
ViGene Biosciences adenoviral particle packaged cDNA for CACNG5 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for CACNG5 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CACNG5 gene
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CACNG5 Gene
Localization for CACNG5 Gene
Subcellular locations from UniProtKB/Swiss-Prot for CACNG5 Gene
- Membrane; Multi-pass membrane protein. Cell junction, synapse, postsynaptic cell membrane, postsynaptic density.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| extracellular | 2 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016021 | integral component of membrane | IEA | -- |
| GO:0045211 | postsynaptic membrane | IEA | -- |
Pathways & Interactions for CACNG5 Gene
More details on SuperPathways for CACNG5| Superpath | Contained pathways | ||
|---|---|---|---|
| 1 | DREAM Repression and Dynorphin Expression |
.44
|
.36
|
| 2 | TCR Signaling (Qiagen) |
.68
|
.39
|
| 3 | Hypertrophic cardiomyopathy (HCM) | ||
| 4 | Activation of cAMP-Dependent PKA |
.77
|
.56
|
| 5 | Sweet Taste Signaling |
Pathways by source for CACNG5 Gene
1 BioSystems pathway for CACNG5 Gene
5 Reactome pathways for CACNG5 Gene
1 GeneGo (Thomson Reuters) pathway for CACNG5 Gene
37 Qiagen pathways for CACNG5 Gene
Interacting Proteins for CACNG5 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0070588 | calcium ion transmembrane transport | IEA | -- |
No data available for SIGNOR curated interactions for CACNG5 Gene
Drugs & Compounds for CACNG5 Gene
(1) ApexBio Compounds for CACNG5 Gene
| Compound | Action | Cas Number |
|---|---|---|
| Aniracetam | Nootropic drug for senile dementia | 72432-10-1 |
Drug Products
- ApexBio compounds for CACNG5
Transcripts for CACNG5 Gene
mRNA/cDNA for CACNG5 Gene
- (3) REFSEQ mRNAs :
- (5) Additional mRNA sequences :
- (5) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CACNG5 Gene
CRISPR Products
-
OriGene CRISPR knockouts for CACNG5
-
Santa Cruz Biotechnology (SCBT) CRISPR for CACNG5
- GenScript: Design CRISPR guide RNA sequences for CACNG5
miRNA Products
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Clone Products
- OriGene clones in human for CACNG5
- OriGene ORF clones in human,mouse,rat for CACNG5
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Flow Cytometry Products
Expression for CACNG5 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Skeletal Muscle (Muscoskeletal System)
-
Eye (Sensory Organs)
- GABAergic Amacrine Cells Inner Nuclear Layer
-
Neurons
- GABAergic Amacrine Cells Inner Nuclear Layer
- Brain (Nervous System)
mRNA differential expression in normal tissues according to GTEx for CACNG5 Gene
This gene is overexpressed in Brain - Frontal Cortex (BA9) (x5.5), Brain - Anterior cingulate cortex (BA24) (x5.5), Brain - Nucleus accumbens (basal ganglia) (x4.7), Brain - Putamen (basal ganglia) (x4.6), Brain - Hypothalamus (x4.4), and Brain - Amygdala (x4.2).
This gene is overexpressed in Retina (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CACNG5 Gene
SOURCE GeneReport for Unigene cluster for CACNG5 Gene Hs.278907
- Elite partner
Primer Products
-
OriGene qPCR primer pairs for CACNG5
No data available for mRNA Expression by UniProt/SwissProt for CACNG5 Gene
Orthologs for CACNG5 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| cow (Bos Taurus) |
Mammalia | CACNG5 35 |
|
||
| CACNG5 36 |
|
OneToOne | |||
| dog (Canis familiaris) |
Mammalia | CACNG5 35 |
|
||
| CACNG5 36 |
|
OneToOne | |||
| mouse (Mus musculus) |
Mammalia | Cacng5 35 |
|
||
| Cacng5 16 |
|
||||
| Cacng5 36 |
|
OneToOne | |||
| chimpanzee (Pan troglodytes) |
Mammalia | CACNG5 35 |
|
||
| CACNG5 36 |
|
OneToOne | |||
| rat (Rattus norvegicus) |
Mammalia | Cacng5 35 |
|
||
| chicken (Gallus gallus) |
Aves | LOC100859614 35 |
|
||
| -- 36 |
|
OneToMany | |||
| -- 36 |
|
OneToMany | |||
| lizard (Anolis carolinensis) |
Reptilia | CACNG5 36 |
|
OneToOne | |
| zebrafish (Danio rerio) |
Actinopterygii | LOC100331116 35 |
|
||
| cacng5a 36 |
|
OneToMany | |||
| cacng5b 36 |
|
OneToMany |
- Species with no ortholog for CACNG5:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for CACNG5 Gene
(3) SIMAP similar genes for CACNG5 Gene using alignment to 1 proteins:
Variants for CACNG5 Gene
| SNP ID | Clin | Chr 17 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1002327 | -- | 66,878,497(-) | GTCTG(A/G)GGCAG | intron-variant | |
| rs722195 | -- | 66,875,951(-) | AGGAT(A/G)TGACA | intron-variant, upstream-variant-2KB | |
| rs722617 | -- | 66,876,665(+) | GAGGA(C/T)ACTTT | intron-variant, upstream-variant-2KB | |
| rs726938 | -- | 66,874,156(+) | TGATC(A/C)TCAGT | intron-variant | |
| rs737063 | -- | 66,843,486(+) | ATCCC(A/G)GAGAG | intron-variant |
Residual Variation Intolerance Score:
51.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.93;
35.82% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for CACNG5 Gene
- HapMap Linkage Disequilibrium report
- CACNG5
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CACNG5 Gene
Disorders for CACNG5 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| schizophrenia |
|
|
Search CACNG5 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for CACNG5
No data available for UniProtKB/Swiss-Prot and Genatlas for CACNG5 Gene
Publications for CACNG5 Gene
- Identification of three novel Ca(2+) channel gamma subunit genes reveals molecular diversification by tandem and chromosome duplication. (PMID: 10613843) Burgess D.L. … Noebels J.L. (Genome Res. 1999) 2 3 4 67
- Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes. (PMID: 21057379) Curtis D. … Gurling H.M. (Psychiatr. Genet. 2011) 3
- Calcium channel gamma subunits: a functionally diverse protein family. (PMID: 17652770) Chen R.S. … Best P.M. (Cell Biochem. Biophys. 2007) 3
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
- The novel product of a five-exon stargazin-related gene abolishes CaV2.2 calcium channel expression. (PMID: 11927536) Moss F.J. … Dolphin A.C. (EMBO J. 2002) 3
Products for CACNG5 Gene
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- OriGene Purified Proteins for CACNG5
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- Invitrogen Antibodies for CACNG5
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- ApexBio compounds for CACNG5
- ViGene Biosciences adenoviral particle packaged cDNA for CACNG5 gene
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- ViGene Biosciences ready-to-package AAV shRNAs for CACNG5 gene
- ViGene Biosciences ready-to-package AAV shRNAs for CACNG5 gene
- ViGene Biosciences ready-to-package AAV shRNAs for CACNG5 gene
- Search ViGene Biosciences for CACNG5
- Search ViGene Biosciences for CACNG5
- Santa Cruz Biotechnology (SCBT) Antibodies for CACNG5
- Search Santa Cruz Biotechnology (SCBT) for CACNG5 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for CACNG5
Sources for CACNG5 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) I2D
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) RNAdb
- (30) ASD
- (31) ECgene
- (32) GeneAnnot
- (33) SAGE
- (34) SOURCE
- (35) HomoloGene
- (36) PanEnsembl
- (37) euGenes
- (38) SGD
- (39) FlyBase
- (40) WormBase
- (41) Pseudogene
- (42) DGV
- (43) dbSNP
- (44) HapMap
- (45) GenAtlas
- (46) GeneTests
- (47) HGMD
- (48) GAD
- (49) LSDB
- (50) BGMUT
- (51) HuGE
- (52) eBioscience
- (53) Atlas
- (54) Cell Signaling Technology
- (55) GenBank
- (56) H-invDB
- (57) HORDE
- (58) HUGE
- (59) IMGT
- (60) Leiden
- (61) MILLIPORE
- (62) miRBase
- (63) DME
- (64) Nature
- (65) NCBI
- (66) OriGene
- (67) PubMed
- (68) R&D Systems
- (69) Salk
- (70) TGDB
- (71) Tufts
- (72) YEDA
- (73) CROW21
- (74) Tocris
- (75) Abcam
- (76) Novus
- (77) ProSpec
- (78) Sino Biological
- (79) GenScript
- (80) Qiagen
- (81) Cloud-Clone Corp.
- (82) Enzo Life Sciences
- (83) OCA
- (84) Proteopedia
- (85) MOPED
- (86) SPIRE
- (87) neXtProt
- (88) Reactome
- (89) GeneGo (Thomson Reuters)
- (90) fRNAdb
- (91) DISEASES
- (92) SIMAP
- (93) GenomeRNAi
- (94) LifeMap
- (95) miRTarBase
- (96) MalaCards
- (97) Invitrogen
- (98) BitterDB
- (99) Vector BioLabs
- (100) ESI-BIO
- (101) RefSeq
- (102) BioSystems
- (103) MaxQB
- (104) IUPHAR
- (105) BioGPS
- (106) Illumina
- (107) COMPARTMENTS
- (108) HOMER
- (109) PaxDb
- (110) ApexBio
- (111) Addgene
- (112) Advanced Cell Diagnostics
- (113) antibodies-online
- (114) CYP
- (115) NONCODE
- (116) SwitchGear Genomics
- (117) TreeFam
- (118) PathCards
- (119) GeneReviews
- (120) GeneTex
- (121) Taconic Biosciences
- (122) GTEx
- (123) ProteomicsDB
- (124) SCBT
- (125) DGIdb
- (126) ClinicalTrials
- (127) FDA Approved Drugs
- (128) RVIS
- (129) SIGNOR
- (130) diseasecard
- (131) NIH Rare Diseases
- (132) Orphanet
- (133) UMLS
- (134) GTR
- (135) Disease Ontology
- (136) Genetics Home Reference
- (137) MeSH
- (138) MedlinePlus
- (139) CDC
- (140) NINDS
- (141) NCBI Bookshelf
- (142) ClinVar
- (143) Gene Damage Index
- (144) ViGene Biosciences
- (145) HPO
- (146) UDN
- (147) VISTA
- (148) FANTOM5
- (149) ENCODE
- (150) ProSci
- (151) Horizon