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Aliases for CACNA2D3-AS1 Gene

Subcategory (RNA class) for CACNA2D3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA2D3-AS1 Gene

  • CACNA2D3 Antisense RNA 1 2 3 5
  • CACNA2D3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CACNA2D3-AS1 Gene

Previous GeneCards Identifiers for CACNA2D3-AS1 Gene

  • GC00U933975
  • GC03M054910

Summaries for CACNA2D3-AS1 Gene

GeneCards Summary for CACNA2D3-AS1 Gene

CACNA2D3-AS1 (CACNA2D3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA2D3-AS1 Gene

Genomics for CACNA2D3-AS1 Gene

Regulatory Elements for CACNA2D3-AS1 Gene

Enhancers for CACNA2D3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G054950 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -52.5 -52536 6.5 CTCF ESRRA NFIB TAF1 JUN ZIC2 RAD21 ZNF335 SCRT2 SMC3 CACNA2D3-AS1 LRTM1
GH03G054869 1.1 Ensembl ENCODE dbSUPER 11.4 +30.7 30682 1.9 CTCF JUND SMC3 REST MAFK RAD21 CACNA2D3-AS1 GC03M054892 GC03M054844
GH03G054926 0.7 ENCODE 12 -25.7 -25723 0.6 PKNOX1 ATF1 TBL1XR1 ARNT FOSL1 TCF12 GATA2 ELK1 RNF2 E2F5 CACNA2D3-AS1 LRTM1
GH03G054874 0.5 ENCODE dbSUPER 12.3 +25.1 25053 3.2 CACNA2D3-AS1 LRTM1 GC03M054892 GC03M054844
GH03G054900 0.8 Ensembl ENCODE 0.7 -0.4 -426 2.5 HDAC2 SMARCA4 SCRT2 ZMYM3 KDM1A CACNA2D3-AS1 LRTM1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACNA2D3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CACNA2D3-AS1 Gene

Chromosome:
3
Start:
54,874,605 bp from pter
End:
54,901,255 bp from pter
Size:
26,651 bases
Orientation:
Minus strand

Genomic View for CACNA2D3-AS1 Gene

Genes around CACNA2D3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA2D3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA2D3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA2D3-AS1 Gene

Proteins for CACNA2D3-AS1 Gene

Post-translational modifications for CACNA2D3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA2D3-AS1 Gene

Domains & Families for CACNA2D3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA2D3-AS1 Gene

Function for CACNA2D3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA2D3-AS1 Gene

Localization for CACNA2D3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CACNA2D3-AS1 Gene

Pathways & Interactions for CACNA2D3-AS1 Gene

SuperPathways for CACNA2D3-AS1 Gene

No Data Available

Interacting Proteins for CACNA2D3-AS1 Gene

Gene Ontology (GO) - Biological Process for CACNA2D3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA2D3-AS1 Gene

Transcripts for CACNA2D3-AS1 Gene

mRNA/cDNA for CACNA2D3-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACNA2D3-AS1 Gene

CACNA2D3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA2D3-AS1 Gene

No ASD Table

Relevant External Links for CACNA2D3-AS1 Gene

GeneLoc Exon Structure for
CACNA2D3-AS1
ECgene alternative splicing isoforms for
CACNA2D3-AS1

Expression for CACNA2D3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA2D3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA2D3-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x5.2), Brain - Frontal Cortex (BA9) (x5.0), Brain - Putamen (basal ganglia) (x4.7), Brain - Cortex (x4.6), and Brain - Caudate (basal ganglia) (x4.1).

SOURCE GeneReport for Unigene cluster for CACNA2D3-AS1 Gene:

Hs.570583
genes like me logo Genes that share expression patterns with CACNA2D3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA2D3-AS1 Gene

Orthologs for CACNA2D3-AS1 Gene

Evolution for CACNA2D3-AS1 Gene

ENSEMBL:
Gene Tree for CACNA2D3-AS1 (if available)
TreeFam:
Gene Tree for CACNA2D3-AS1 (if available)

No data available for Orthologs for CACNA2D3-AS1 Gene

Paralogs for CACNA2D3-AS1 Gene

No data available for Paralogs for CACNA2D3-AS1 Gene

Variants for CACNA2D3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CACNA2D3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000094088 -- 54,895,558(+) AAACC(A/G)ACCAG intron-variant
rs1000290738 -- 54,895,259(+) ATATG(A/G)GATTA intron-variant
rs1000430657 -- 54,901,062(+) TTTTG(-/T)TCACT intron-variant
rs1000528285 -- 54,895,766(+) CGCCT(C/G)AGTTG intron-variant
rs1000642541 -- 54,885,184(+) TACCC(C/T)TAACC intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CACNA2D3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv517851 CNV gain 19592680

Relevant External Links for CACNA2D3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA2D3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA2D3-AS1 Gene

Disorders for CACNA2D3-AS1 Gene

Relevant External Links for CACNA2D3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CACNA2D3-AS1

No disorders were found for CACNA2D3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA2D3-AS1 Gene

Publications for CACNA2D3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CACNA2D3-AS1 Gene

Sources for CACNA2D3-AS1 Gene

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