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Aliases for CACNA1G-AS1 Gene

Subcategory (RNA class) for CACNA1G-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA1G-AS1 Gene

  • CACNA1G Antisense RNA 1 2 3 5
  • CACNA1G Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CACNA1G-AS1 Gene

Previous GeneCards Identifiers for CACNA1G-AS1 Gene

  • GC17M048635

Summaries for CACNA1G-AS1 Gene

GeneCards Summary for CACNA1G-AS1 Gene

CACNA1G-AS1 (CACNA1G Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CACNA1G-AS1 include Retinitis Pigmentosa 11.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1G-AS1 Gene

Genomics for CACNA1G-AS1 Gene

Regulatory Elements for CACNA1G-AS1 Gene

Enhancers for CACNA1G-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G050171 2.1 FANTOM5 Ensembl ENCODE dbSUPER 30.2 +369.6 369587 42.0 CREB3L1 ZFP64 DMAP1 YBX1 FEZF1 YY1 ZNF143 ZNF263 SP3 TBX21 SGCA ENSG00000262837 CACNA1G-AS1 MYCBPAP LOC105371824 FLJ45513 NXPH3 TMEM92-AS1 COL1A1 TMEM92
GH17G050532 1.6 Ensembl ENCODE dbSUPER 23 +28.1 28093 3.8 HDGF PKNOX1 AGO1 ARID4B SIN3A FEZF1 ZNF2 ZBTB7B ZNF143 FOS EPN3 SPATA20 CACNA1G-AS1 MYCBPAP CACNA1G LOC105371824
GH17G049706 1.4 ENCODE dbSUPER 24.3 +853.9 853890 2.9 CREB3L1 MLX AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC CACNA1G-AS1 ENSG00000230532 KAT7 PPP1R9B SUMO2P17 NXPH3 PIR42611 ENSG00000250751
GH17G050862 2.5 ENCODE dbSUPER 12.7 -303.0 -303035 8.5 CREB3L1 MLX AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TOB1-AS1 ENSG00000247011 ENSG00000251665 CACNA1G-AS1 WFIKKN2 UTP18 PPP1R9B RPL5P33
GH17G050395 1.2 ENCODE 22.7 +165.3 165298 2.7 MLX CREB3L1 DMAP1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 SSRP1 ENSG00000262837 CACNA1G-AS1 FLJ45513 FAM117A COL1A1 XYLT2 NXPH3 EME1 ANKRD40 LRRC59
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACNA1G-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CACNA1G-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095690 1308 801 PKNOX1 RB1 FUS ZSCAN4 ARID4B SIN3A ZNF48 GLIS2 PCBP1 FOS

Genomic Location for CACNA1G-AS1 Gene

Chromosome:
17
Start:
50,556,207 bp from pter
End:
50,562,108 bp from pter
Size:
5,902 bases
Orientation:
Minus strand

Genomic View for CACNA1G-AS1 Gene

Genes around CACNA1G-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1G-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1G-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1G-AS1 Gene

Proteins for CACNA1G-AS1 Gene

Post-translational modifications for CACNA1G-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1G-AS1 Gene

Domains & Families for CACNA1G-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1G-AS1 Gene

Function for CACNA1G-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1G-AS1 Gene

Localization for CACNA1G-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CACNA1G-AS1 Gene

Pathways & Interactions for CACNA1G-AS1 Gene

SuperPathways for CACNA1G-AS1 Gene

No Data Available

Interacting Proteins for CACNA1G-AS1 Gene

Gene Ontology (GO) - Biological Process for CACNA1G-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1G-AS1 Gene

Drugs & Compounds for CACNA1G-AS1 Gene

No Compound Related Data Available

Transcripts for CACNA1G-AS1 Gene

mRNA/cDNA for CACNA1G-AS1 Gene

(2) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACNA1G-AS1 Gene

CACNA1G antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1G-AS1 Gene

No ASD Table

Relevant External Links for CACNA1G-AS1 Gene

GeneLoc Exon Structure for
CACNA1G-AS1
ECgene alternative splicing isoforms for
CACNA1G-AS1

Expression for CACNA1G-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1G-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1G-AS1 Gene

This gene is overexpressed in Brain - Cerebellum (x5.5) and Cervix - Ectocervix (x4.4).

SOURCE GeneReport for Unigene cluster for CACNA1G-AS1 Gene:

Hs.558704
genes like me logo Genes that share expression patterns with CACNA1G-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1G-AS1 Gene

Orthologs for CACNA1G-AS1 Gene

Evolution for CACNA1G-AS1 Gene

ENSEMBL:
Gene Tree for CACNA1G-AS1 (if available)
TreeFam:
Gene Tree for CACNA1G-AS1 (if available)

No data available for Orthologs for CACNA1G-AS1 Gene

Paralogs for CACNA1G-AS1 Gene

No data available for Paralogs for CACNA1G-AS1 Gene

Variants for CACNA1G-AS1 Gene

Sequence variations from dbSNP and Humsavar for CACNA1G-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000075862 -- 50,558,945(+) GCACT(G/T)AGGGG intron-variant, upstream-variant-2KB
rs1000243800 -- 50,560,003(+) AATTG(A/T)CTCGG intron-variant, upstream-variant-2KB
rs1000296300 -- 50,559,815(+) CCCTC(C/T)TGGGG intron-variant, upstream-variant-2KB
rs1000630212 -- 50,558,644(+) GTGGG(A/G)CCTGC intron-variant
rs1000899720 -- 50,563,225(+) CCCTC(A/G)TCACA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CACNA1G-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833477 CNV loss 17160897

Relevant External Links for CACNA1G-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1G-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1G-AS1 Gene

Disorders for CACNA1G-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CACNA1G-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CACNA1G-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CACNA1G-AS1
genes like me logo Genes that share disorders with CACNA1G-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CACNA1G-AS1 Gene

Publications for CACNA1G-AS1 Gene

  1. Identification of skin-related lncRNAs as potential biomarkers that involved in Wnt pathways in keloids. (PMID: 28404955) Sun X.J. … Wang B. (Oncotarget 2017) 2 3 64
  2. LncRNA expression profiles and validation in keloid and normal skin tissue. (PMID: 26397149) Liang X. … Wang X. (Int. J. Oncol. 2015) 2 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for CACNA1G-AS1 Gene

Sources for CACNA1G-AS1 Gene

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