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Aliases for CACNA1G-AS1 Gene

Subcategory (RNA class) for CACNA1G-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA1G-AS1 Gene

  • CACNA1G Antisense RNA 1 2 3 5
  • CACNA1G Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CACNA1G-AS1 Gene

Previous GeneCards Identifiers for CACNA1G-AS1 Gene

  • GC17M048635

Summaries for CACNA1G-AS1 Gene

GeneCards Summary for CACNA1G-AS1 Gene

CACNA1G-AS1 (CACNA1G Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CACNA1G-AS1 include Retinitis Pigmentosa 11.

Additional gene information for CACNA1G-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1G-AS1 Gene

Genomics for CACNA1G-AS1 Gene

Regulatory Elements for CACNA1G-AS1 Gene

Enhancers for CACNA1G-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H050532 1.5 Ensembl ENCODE dbSUPER 22.7 +28.1 28093 3.8 ARID4B SIN3A GLI4 ZBTB7B GLIS2 ELK1 FOS SP3 ZNF592 WT1 EPN3 SPATA20 CACNA1G-AS1 MYCBPAP CACNA1G KAT7 LOC105371824
GH17H050395 1.2 ENCODE 22.1 +165.3 165298 2.7 MLX DMAP1 SLC30A9 ZNF143 SP3 NFYC SSRP1 ZNF610 GLIS1 RCOR2 ENSG00000262837 MBTD1 LOC105371824 LUC7L3 UTP18 CACNA1G-AS1 FLJ45513 FAM117A KAT7 XYLT2
GH17H050371 1.2 ENCODE 21.8 +189.5 189490 2.7 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 LUC7L3 MBTD1 CACNA1G-AS1 ENSG00000262837 KAT7 MRPL27 XYLT2 NXPH3 SAMD14 EME1
GH17H049735 2.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 9.9 +818.9 818891 15.6 HNRNPUL1 HDGF PKNOX1 ARNT SIN3A FEZF1 YY1 ZNF766 ZNF143 FOS ENSG00000262837 LUC7L3 UBE2Z FAM117A KAT7 FLJ45513 NXPH3 ZNF652 ENSG00000230532 SLC35B1
GH17H049758 1.9 VISTA Ensembl ENCODE dbSUPER 10.4 +800.2 800159 6.4 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF207 FOS ENSG00000262837 UBE2Z LUC7L3 FAM117A FLJ45513 SPOP COL1A1 TAC4 SLC35B1 ITGA3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACNA1G-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CACNA1G-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095690 1308 801 PKNOX1 RB1 ARID4B SIN3A GLIS2 FOS SP3 SP5 NFYA NFYC

Genomic Locations for CACNA1G-AS1 Gene

Genomic Locations for CACNA1G-AS1 Gene
chr17:50,556,207-50,562,108
(GRCh38/hg38)
Size:
5,902 bases
Orientation:
Minus strand
chr17:48,633,568-48,639,469
(GRCh37/hg19)

Genomic View for CACNA1G-AS1 Gene

Genes around CACNA1G-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1G-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1G-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1G-AS1 Gene

Proteins for CACNA1G-AS1 Gene

Post-translational modifications for CACNA1G-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1G-AS1 Gene

Domains & Families for CACNA1G-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1G-AS1 Gene

Function for CACNA1G-AS1 Gene

Phenotypes From GWAS Catalog for CACNA1G-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1G-AS1 Gene

Localization for CACNA1G-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1G-AS1 Gene

Pathways & Interactions for CACNA1G-AS1 Gene

SuperPathways for CACNA1G-AS1 Gene

No Data Available

Interacting Proteins for CACNA1G-AS1 Gene

Gene Ontology (GO) - Biological Process for CACNA1G-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1G-AS1 Gene

Drugs & Compounds for CACNA1G-AS1 Gene

No Compound Related Data Available

Transcripts for CACNA1G-AS1 Gene

mRNA/cDNA for CACNA1G-AS1 Gene

(2) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACNA1G-AS1 Gene

CACNA1G antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1G-AS1 Gene

No ASD Table

Relevant External Links for CACNA1G-AS1 Gene

GeneLoc Exon Structure for
CACNA1G-AS1
ECgene alternative splicing isoforms for
CACNA1G-AS1

Expression for CACNA1G-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1G-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1G-AS1 Gene

This gene is overexpressed in Brain - Cerebellum (x5.5) and Cervix - Ectocervix (x4.4).

SOURCE GeneReport for Unigene cluster for CACNA1G-AS1 Gene:

Hs.558704
genes like me logo Genes that share expression patterns with CACNA1G-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1G-AS1 Gene

Orthologs for CACNA1G-AS1 Gene

Evolution for CACNA1G-AS1 Gene

ENSEMBL:
Gene Tree for CACNA1G-AS1 (if available)
TreeFam:
Gene Tree for CACNA1G-AS1 (if available)

No data available for Orthologs for CACNA1G-AS1 Gene

Paralogs for CACNA1G-AS1 Gene

No data available for Paralogs for CACNA1G-AS1 Gene

Variants for CACNA1G-AS1 Gene

Sequence variations from dbSNP and Humsavar for CACNA1G-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000075862 -- 50,558,945(+) GCACT(G/T)AGGGG intron-variant, upstream-variant-2KB
rs1000243800 -- 50,560,003(+) AATTG(A/T)CTCGG intron-variant, upstream-variant-2KB
rs1000296300 -- 50,559,815(+) CCCTC(C/T)TGGGG intron-variant, upstream-variant-2KB
rs1000630212 -- 50,558,644(+) GTGGG(A/G)CCTGC intron-variant
rs1000899720 -- 50,563,225(+) CCCTC(A/G)TCACA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CACNA1G-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833477 CNV loss 17160897

Relevant External Links for CACNA1G-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1G-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1G-AS1 Gene

Disorders for CACNA1G-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CACNA1G-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CACNA1G-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CACNA1G-AS1
genes like me logo Genes that share disorders with CACNA1G-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CACNA1G-AS1 Gene

Publications for CACNA1G-AS1 Gene

  1. Identification of skin-related lncRNAs as potential biomarkers that involved in Wnt pathways in keloids. (PMID: 28404955) Sun XJ … Wang B (Oncotarget 2017) 2 3 60
  2. LncRNA expression profiles and validation in keloid and normal skin tissue. (PMID: 26397149) Liang X … Wang X (International journal of oncology 2015) 2 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for CACNA1G-AS1 Gene

Sources for CACNA1G-AS1 Gene

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