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Aliases for CACNA1C-IT3 Gene

Subcategory (RNA class) for CACNA1C-IT3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA1C-IT3 Gene

  • CACNA1C Intronic Transcript 3 2 3 5
  • CACNA1C Intronic Transcript 3 (Non-Protein Coding) 2

External Ids for CACNA1C-IT3 Gene

Previous GeneCards Identifiers for CACNA1C-IT3 Gene

  • GC00U933536
  • GC12P002379

Summaries for CACNA1C-IT3 Gene

GeneCards Summary for CACNA1C-IT3 Gene

CACNA1C-IT3 (CACNA1C Intronic Transcript 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-IT3 Gene

Genomics for CACNA1C-IT3 Gene

Regulatory Elements for CACNA1C-IT3 Gene

Enhancers for CACNA1C-IT3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G002294 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +25.7 25672 2.4 MAX CEBPG ZIC2 ZFHX2 SCRT2 FOS ZNF600 MAFK NFE2L2 EGR2 CACNA1C-IT3 PIR32202
GH12G002263 1.8 FANTOM5 Ensembl ENCODE dbSUPER 7.3 -2.9 -2904 6.5 PKNOX1 ZNF133 SIN3A BMI1 ZNF48 RAD21 YY1 ZNF366 FOS ETV6 CACNA1C-AS4 CACNA1C-IT3 PIR46918
GH12G002282 1.3 Ensembl ENCODE dbSUPER 8.8 +15.9 15923 6.4 CTCF MXI1 PKNOX1 ZSCAN26 TEAD4 MAX ZNF384 RAD21 ZNF316 SCRT2 CACNA1C-AS4 CACNA1C-IT3 PIR32202
GH12G002300 1 Ensembl ENCODE dbSUPER 10.1 +32.2 32230 2.5 CTCF ZFHX2 ZSCAN4 SCRT2 ZIC2 CACNA1C-IT3 PIR32202 GC12P002340
GH12G002256 1.2 ENCODE dbSUPER 7.2 -13.1 -13078 1.6 ZNF133 GLI4 TCF12 ZNF121 ZNF302 ZNF416 ZNF202 YY2 ZNF488 ZFP41 ITFG2 CBX3P4 IQSEC3P1 RPS27P3 DCP1B CACNA1C-AS4 CACNA1C-IT3 PIR46918
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Genomic Location for CACNA1C-IT3 Gene

Chromosome:
12
Start:
2,269,776 bp from pter
End:
2,288,937 bp from pter
Size:
19,162 bases
Orientation:
Plus strand

Genomic View for CACNA1C-IT3 Gene

Genes around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-IT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT3 Gene

Proteins for CACNA1C-IT3 Gene

Post-translational modifications for CACNA1C-IT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT3 Gene

Domains & Families for CACNA1C-IT3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-IT3 Gene

Function for CACNA1C-IT3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT3 Gene

Localization for CACNA1C-IT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CACNA1C-IT3 Gene

Pathways & Interactions for CACNA1C-IT3 Gene

SuperPathways for CACNA1C-IT3 Gene

No Data Available

Interacting Proteins for CACNA1C-IT3 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-IT3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-IT3 Gene

Drugs & Compounds for CACNA1C-IT3 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT3 Gene

mRNA/cDNA for CACNA1C-IT3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACNA1C-IT3 Gene

CACNA1C intronic transcript 3 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT3 Gene

No ASD Table

Relevant External Links for CACNA1C-IT3 Gene

GeneLoc Exon Structure for
CACNA1C-IT3
ECgene alternative splicing isoforms for
CACNA1C-IT3

Expression for CACNA1C-IT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1C-IT3 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-IT3 Gene

This gene is overexpressed in Testis (x45.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-IT3 Gene:

Hs.653548
genes like me logo Genes that share expression patterns with CACNA1C-IT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT3 Gene

Orthologs for CACNA1C-IT3 Gene

Evolution for CACNA1C-IT3 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT3 (if available)
TreeFam:
Gene Tree for CACNA1C-IT3 (if available)

No data available for Orthologs for CACNA1C-IT3 Gene

Paralogs for CACNA1C-IT3 Gene

No data available for Paralogs for CACNA1C-IT3 Gene

Variants for CACNA1C-IT3 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-IT3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000006012 -- 2,288,740(+) GCTGC(A/G)GGATG intron-variant, nc-transcript-variant
rs1000152978 -- 2,282,337(+) AGTCC(C/T)GTGAG intron-variant
rs1000179221 -- 2,276,579(+) GGAGT(A/G)TAGTG intron-variant
rs1000195365 -- 2,283,366(+) GAATT(C/T)TACTG intron-variant
rs1000332625 -- 2,270,799(+) TTTTG(G/T)GTGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-IT3 Gene

Variant ID Type Subtype PubMed ID
nsv1040370 CNV gain 25217958
nsv509449 CNV insertion 20534489
nsv575 CNV insertion 18451855

Relevant External Links for CACNA1C-IT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-IT3 Gene

Disorders for CACNA1C-IT3 Gene

Relevant External Links for CACNA1C-IT3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CACNA1C-IT3

No disorders were found for CACNA1C-IT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-IT3 Gene

Publications for CACNA1C-IT3 Gene

No publications were found for CACNA1C-IT3 Gene.

Products for CACNA1C-IT3 Gene

Sources for CACNA1C-IT3 Gene

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