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Aliases for CACNA1C-IT3 Gene

Subcategory (RNA class) for CACNA1C-IT3 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CACNA1C-IT3 Gene

  • CACNA1C Intronic Transcript 3 2 3 5
  • CACNA1C Intronic Transcript 3 (Non-Protein Coding) 2

External Ids for CACNA1C-IT3 Gene

Previous GeneCards Identifiers for CACNA1C-IT3 Gene

  • GC00U933536
  • GC12P002379

Summaries for CACNA1C-IT3 Gene

GeneCards Summary for CACNA1C-IT3 Gene

CACNA1C-IT3 (CACNA1C Intronic Transcript 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-IT3 Gene

Genomics for CACNA1C-IT3 Gene

Regulatory Elements for CACNA1C-IT3 Gene

Enhancers for CACNA1C-IT3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F001604 1.8 FANTOM5 Ensembl ENCODE 14.1 -662.2 -662203 6.4 HDGF ARNT MLX WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF302 ENSG00000250132 CACNA1C-AS3 CACNA1C-IT3 DCP1B WNT5B ERC1 RAD52 ADIPOR2 FBXL14 MIR3649
GH12F001658 1.5 FANTOM5 ENCODE 14.1 -608.5 -608491 5.3 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF416 FOS ADIPOR2 CACNA1C-AS3 CACNA1C-IT3 CACNA2D4 ENSG00000256706 DCP1B LRTM2 MIR3649
GH12F001589 1.4 FANTOM5 ENCODE 14.1 -676.4 -676367 7.3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF143 ZNF263 CACNA1C-IT3 WNT5B FBXL14 GC12M001593 PIR54397
GH12F001495 1.4 Ensembl ENCODE 14.1 -773.1 -773081 1.6 HDGF ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF302 ZNF143 FOS ENSG00000255825 CACNA1C-IT3 WNT5B ENSG00000250132 ENSG00000249028 ERC1 LINC00942 GC12P001495
GH12F001924 1.3 Ensembl ENCODE 14.2 -344.8 -344815 1.3 ATF1 ZNF133 FEZF1 GLI4 ZNF2 ZNF121 ZNF302 ZNF416 ZNF548 ZNF263 ITFG2 DCP1B CBX3P4 CACNA1C-AS3 CACNA1C-IT3 LRTM2 ENSG00000250132 IQSEC3P1 CACNA2D4 GC12M001928
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Genomic Location for CACNA1C-IT3 Gene

2,269,776 bp from pter
2,288,937 bp from pter
19,162 bases
Plus strand

Genomic View for CACNA1C-IT3 Gene

Genes around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-IT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT3 Gene

Proteins for CACNA1C-IT3 Gene

Post-translational modifications for CACNA1C-IT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT3 Gene

Domains & Families for CACNA1C-IT3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-IT3 Gene

Function for CACNA1C-IT3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT3 Gene

Localization for CACNA1C-IT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CACNA1C-IT3 Gene

Pathways & Interactions for CACNA1C-IT3 Gene

SuperPathways for CACNA1C-IT3 Gene

No Data Available

Interacting Proteins for CACNA1C-IT3 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-IT3 Gene


No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-IT3 Gene

Transcripts for CACNA1C-IT3 Gene

mRNA/cDNA for CACNA1C-IT3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACNA1C-IT3 Gene

CACNA1C intronic transcript 3 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT3 Gene

No ASD Table

Relevant External Links for CACNA1C-IT3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CACNA1C-IT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-IT3 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-IT3 Gene

This gene is overexpressed in Testis (x45.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-IT3 Gene:

genes like me logo Genes that share expression patterns with CACNA1C-IT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CACNA1C-IT3 Gene

Orthologs for CACNA1C-IT3 Gene

Evolution for CACNA1C-IT3 Gene

Gene Tree for CACNA1C-IT3 (if available)
Gene Tree for CACNA1C-IT3 (if available)

No data available for Orthologs for CACNA1C-IT3 Gene

Paralogs for CACNA1C-IT3 Gene

No data available for Paralogs for CACNA1C-IT3 Gene

Variants for CACNA1C-IT3 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-IT3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10744560 -- 2,277,933(+) AGTCT(C/T)ACTCA intron-variant
rs10774036 -- 2,277,782(+) ATAAC(C/T)GCTCA intron-variant
rs11062181 -- 2,277,362(+) AGACA(C/G)ACACA intron-variant
rs111330946 -- 2,288,877(+) TGTAA(A/G)TGGTG intron-variant, downstream-variant-500B
rs111438652 -- 2,272,697(+) ATAAT(G/T)TGGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-IT3 Gene

Variant ID Type Subtype PubMed ID
nsv575 CNV insertion 18451855
nsv509449 CNV insertion 20534489
nsv1040370 CNV gain 25217958

Relevant External Links for CACNA1C-IT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-IT3 Gene

Disorders for CACNA1C-IT3 Gene

Relevant External Links for CACNA1C-IT3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CACNA1C-IT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-IT3 Gene

Publications for CACNA1C-IT3 Gene

No publications were found for CACNA1C-IT3 Gene.

Products for CACNA1C-IT3 Gene

Sources for CACNA1C-IT3 Gene

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