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Aliases for CACNA1C-IT1 Gene

Subcategory (RNA class) for CACNA1C-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA1C-IT1 Gene

  • CACNA1C Intronic Transcript 1 2 3 5
  • CACNA1C Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for CACNA1C-IT1 Gene

Previous GeneCards Identifiers for CACNA1C-IT1 Gene

  • GC00U933066
  • GC12P002128

Summaries for CACNA1C-IT1 Gene

GeneCards Summary for CACNA1C-IT1 Gene

CACNA1C-IT1 (CACNA1C Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-IT1 Gene

Genomics for CACNA1C-IT1 Gene

Regulatory Elements for CACNA1C-IT1 Gene

Enhancers for CACNA1C-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G002013 1 Ensembl ENCODE dbSUPER 0.7 -4.4 -4377 0.7 RAD21 NR2F2 TCF7L2 TULP3 CACNA1C-IT1 ENSG00000203593
GH12G002016 0.9 dbSUPER 0.7 -0.5 -453 2.1 PKNOX1 BMI1 EGR1 RELB IKZF2 CREM ZNF362 JUNB ZEB2 TBX21 ENSG00000203593 DCP1B CACNA1C-IT1
GH12G002034 1.5 FANTOM5 Ensembl ENCODE 0.4 +17.1 17073 1.0 ATF1 ARNT ARID4B SIN3A ZNF48 ZNF143 ZNF207 ZHX2 MXD4 REST CACNA1C-AS4 LRTM2 CACNA1C-IT2 CACNA1C-IT1
GH12G002009 1 ENCODE dbSUPER 0.4 -8.4 -8444 0.2 CTCF ESRRA FEZF1 RAD21 ZIC2 RARA NR2F6 NR2F1 HMG20A ATF2 FKBP4 ENSG00000203593 CACNA1C-IT1
GH12G002012 1 ENCODE dbSUPER 0.4 -5.8 -5804 0.2 ELF3 SOX13 FOXA2 SAP130 MAX CEBPG RARA YY1 HOMEZ SOX5 ENSG00000203593 CACNA1C-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACNA1C-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CACNA1C-IT1 Gene

Chromosome:
12
Start:
2,018,213 bp from pter
End:
2,020,532 bp from pter
Size:
2,320 bases
Orientation:
Plus strand

Genomic View for CACNA1C-IT1 Gene

Genes around CACNA1C-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT1 Gene

Proteins for CACNA1C-IT1 Gene

Post-translational modifications for CACNA1C-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT1 Gene

Domains & Families for CACNA1C-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-IT1 Gene

Function for CACNA1C-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT1 Gene

Localization for CACNA1C-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CACNA1C-IT1 Gene

Pathways & Interactions for CACNA1C-IT1 Gene

SuperPathways for CACNA1C-IT1 Gene

No Data Available

Interacting Proteins for CACNA1C-IT1 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-IT1 Gene

Drugs & Compounds for CACNA1C-IT1 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT1 Gene

mRNA/cDNA for CACNA1C-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT1 Gene

No ASD Table

Relevant External Links for CACNA1C-IT1 Gene

GeneLoc Exon Structure for
CACNA1C-IT1
ECgene alternative splicing isoforms for
CACNA1C-IT1

Expression for CACNA1C-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1C-IT1 Gene

genes like me logo Genes that share expression patterns with CACNA1C-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT1 Gene

Orthologs for CACNA1C-IT1 Gene

Evolution for CACNA1C-IT1 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT1 (if available)
TreeFam:
Gene Tree for CACNA1C-IT1 (if available)

No data available for Orthologs for CACNA1C-IT1 Gene

Paralogs for CACNA1C-IT1 Gene

No data available for Paralogs for CACNA1C-IT1 Gene

Variants for CACNA1C-IT1 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-IT1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000217518 -- 2,017,062(+) AGGCA(A/G)TGAAG intron-variant, nc-transcript-variant
rs1000220563 -- 2,025,484(+) TTCTT(C/G)TTGAG intron-variant
rs1000322726 -- 2,021,416(+) GCTCA(C/T)ACCTG intron-variant
rs1000323355 -- 2,031,114(+) ATTTT(G/T)TTCTT intron-variant, nc-transcript-variant
rs1000370526 -- 2,027,990(+) CCGTC(C/T)TTGGT intron-variant

Relevant External Links for CACNA1C-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CACNA1C-IT1 Gene

Disorders for CACNA1C-IT1 Gene

No disorders were found for CACNA1C-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CACNA1C-IT1 Gene

Publications for CACNA1C-IT1 Gene

No publications were found for CACNA1C-IT1 Gene.

Products for CACNA1C-IT1 Gene

Sources for CACNA1C-IT1 Gene

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