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Aliases for CACNA1C-AS4 Gene

Subcategory (RNA class) for CACNA1C-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA1C-AS4 Gene

  • CACNA1C Antisense RNA 4 2 3 5
  • CACNA1C Antisense RNA 4 (Non-Protein Coding) 2

External Ids for CACNA1C-AS4 Gene

Previous GeneCards Identifiers for CACNA1C-AS4 Gene

  • GC00U933652
  • GC12M002330

Summaries for CACNA1C-AS4 Gene

GeneCards Summary for CACNA1C-AS4 Gene

CACNA1C-AS4 (CACNA1C Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-AS4 Gene

Genomics for CACNA1C-AS4 Gene

Regulatory Elements for CACNA1C-AS4 Gene

Enhancers for CACNA1C-AS4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G002263 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -43.4 -43392 6.5 PKNOX1 ZNF133 SIN3A BMI1 ZNF48 RAD21 YY1 ZNF366 FOS ETV6 CACNA1C-AS4 CACNA1C-IT3 PIR46918
GH12G002247 1.5 Ensembl ENCODE dbSUPER 11.6 -25.2 -25177 2.4 PKNOX1 FOXA2 MLX ARID4B DMAP1 SLC30A9 ZNF143 SP5 MIER2 PPARG ITFG2 CACNA1C-AS4 CACNA1C-IT3 PIR46918
GH12G002243 1.3 Ensembl ENCODE dbSUPER 12.7 -20.9 -20903 2.5 FOXA2 INSM2 SIN3A FEZF1 ZNF366 ZSCAN5C SCRT2 FOS ZEB2 GLIS1 CACNA1C-AS4 CACNA1C-IT3 PIR46918
GH12G002034 1.5 FANTOM5 Ensembl ENCODE 10.2 +188.2 188196 1.0 ATF1 ARNT ARID4B SIN3A ZNF48 ZNF143 ZNF207 ZHX2 MXD4 REST CACNA1C-AS4 LRTM2 CACNA1C-IT2 CACNA1C-IT1
GH12G002282 1.3 Ensembl ENCODE dbSUPER 11.5 -62.2 -62218 6.4 CTCF MXI1 PKNOX1 ZSCAN26 TEAD4 MAX ZNF384 RAD21 ZNF316 SCRT2 CACNA1C-AS4 CACNA1C-IT3 PIR32202
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Location for CACNA1C-AS4 Gene

Chromosome:
12
Start:
2,220,537 bp from pter
End:
2,223,481 bp from pter
Size:
2,945 bases
Orientation:
Minus strand

Genomic View for CACNA1C-AS4 Gene

Genes around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-AS4 Gene

Proteins for CACNA1C-AS4 Gene

Post-translational modifications for CACNA1C-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-AS4 Gene

Domains & Families for CACNA1C-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-AS4 Gene

Function for CACNA1C-AS4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS4 Gene

Localization for CACNA1C-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CACNA1C-AS4 Gene

Pathways & Interactions for CACNA1C-AS4 Gene

SuperPathways for CACNA1C-AS4 Gene

No Data Available

Interacting Proteins for CACNA1C-AS4 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-AS4 Gene

Drugs & Compounds for CACNA1C-AS4 Gene

No Compound Related Data Available

Transcripts for CACNA1C-AS4 Gene

mRNA/cDNA for CACNA1C-AS4 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACNA1C-AS4 Gene

CACNA1C antisense RNA 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-AS4 Gene

No ASD Table

Relevant External Links for CACNA1C-AS4 Gene

GeneLoc Exon Structure for
CACNA1C-AS4
ECgene alternative splicing isoforms for
CACNA1C-AS4

Expression for CACNA1C-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1C-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-AS4 Gene

This gene is overexpressed in Testis (x26.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-AS4 Gene:

Hs.372570
genes like me logo Genes that share expression patterns with CACNA1C-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-AS4 Gene

Orthologs for CACNA1C-AS4 Gene

Evolution for CACNA1C-AS4 Gene

ENSEMBL:
Gene Tree for CACNA1C-AS4 (if available)
TreeFam:
Gene Tree for CACNA1C-AS4 (if available)

No data available for Orthologs for CACNA1C-AS4 Gene

Paralogs for CACNA1C-AS4 Gene

No data available for Paralogs for CACNA1C-AS4 Gene

Variants for CACNA1C-AS4 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-AS4 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000143742 -- 2,224,506(+) TTCTG(-/CTCCACCC)CTTGT intron-variant, upstream-variant-2KB
rs1000736153 -- 2,222,200(+) CTTAC(C/T)ATGTC intron-variant, nc-transcript-variant
rs1001647927 -- 2,224,120(+) GAACC(C/T)CCTGC intron-variant, upstream-variant-2KB
rs1002064785 -- 2,221,398(+) GCAGT(G/T)GAGGT intron-variant
rs1003256673 -- 2,220,672(+) AGCTG(C/G)TGGTA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-AS4 Gene

Variant ID Type Subtype PubMed ID
esv2665790 CNV deletion 23128226
esv3628307 CNV loss 21293372
nsv1040370 CNV gain 25217958

Relevant External Links for CACNA1C-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-AS4 Gene

Disorders for CACNA1C-AS4 Gene

Relevant External Links for CACNA1C-AS4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CACNA1C-AS4

No disorders were found for CACNA1C-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS4 Gene

Publications for CACNA1C-AS4 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for CACNA1C-AS4 Gene

Sources for CACNA1C-AS4 Gene

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