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Aliases for CACNA1C-AS2 Gene

Subcategory (RNA class) for CACNA1C-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA1C-AS2 Gene

  • CACNA1C Antisense RNA 2 2 3 5
  • CACNA1C Antisense RNA 2 (Non-Protein Coding) 2

External Ids for CACNA1C-AS2 Gene

Previous GeneCards Identifiers for CACNA1C-AS2 Gene

  • GC00U933181
  • GC12M002778

Summaries for CACNA1C-AS2 Gene

GeneCards Summary for CACNA1C-AS2 Gene

CACNA1C-AS2 (CACNA1C Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-AS2 Gene

Genomics for CACNA1C-AS2 Gene

Regulatory Elements for CACNA1C-AS2 Gene

Enhancers for CACNA1C-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G002682 0.5 ENCODE 0.4 -10.8 -10840 0.3 CTCF ZNF654 SMC3 RAD21 CBX3P4 FKBP4 ITFG2 CACNA1C-AS1 CACNA1C-AS2
GH12G002685 0.5 ENCODE 0.4 -10.5 -10480 0.2 CTCF SMC3 RAD21 CBX3P4 FKBP4 ITFG2 CACNA1C-AS1 CACNA1C-AS2
GH12G002683 0.4 ENCODE 0.4 -11.1 -11120 0.1 CTCF CBX3P4 FKBP4 ITFG2 CACNA1C-AS1 CACNA1C-AS2
GH12G002684 0.4 ENCODE 0.4 -10.2 -10230 0.1 ZNF600 CBX3P4 FKBP4 ITFG2 CACNA1C-AS1 CACNA1C-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACNA1C-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CACNA1C-AS2 Gene

Chromosome:
12
Start:
2,668,500 bp from pter
End:
2,672,220 bp from pter
Size:
3,721 bases
Orientation:
Minus strand

Genomic View for CACNA1C-AS2 Gene

Genes around CACNA1C-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-AS2 Gene

Proteins for CACNA1C-AS2 Gene

Post-translational modifications for CACNA1C-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-AS2 Gene

Domains & Families for CACNA1C-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-AS2 Gene

Function for CACNA1C-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS2 Gene

Localization for CACNA1C-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CACNA1C-AS2 Gene

Pathways & Interactions for CACNA1C-AS2 Gene

SuperPathways for CACNA1C-AS2 Gene

No Data Available

Interacting Proteins for CACNA1C-AS2 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-AS2 Gene

Drugs & Compounds for CACNA1C-AS2 Gene

No Compound Related Data Available

Transcripts for CACNA1C-AS2 Gene

mRNA/cDNA for CACNA1C-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-AS2 Gene

No ASD Table

Relevant External Links for CACNA1C-AS2 Gene

GeneLoc Exon Structure for
CACNA1C-AS2
ECgene alternative splicing isoforms for
CACNA1C-AS2

Expression for CACNA1C-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1C-AS2 Gene

genes like me logo Genes that share expression patterns with CACNA1C-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-AS2 Gene

Orthologs for CACNA1C-AS2 Gene

Evolution for CACNA1C-AS2 Gene

ENSEMBL:
Gene Tree for CACNA1C-AS2 (if available)
TreeFam:
Gene Tree for CACNA1C-AS2 (if available)

No data available for Orthologs for CACNA1C-AS2 Gene

Paralogs for CACNA1C-AS2 Gene

No data available for Paralogs for CACNA1C-AS2 Gene

Variants for CACNA1C-AS2 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-AS2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs377568567 Likely benign 2,668,924(+) CTCTT(C/T)GCCTG intron-variant, nc-transcript-variant
rs563090568 Likely benign 2,668,968(+) AGCGA(C/T)GGGAC nc-transcript-variant, reference, synonymous-codon
rs202194703 Uncertain significance 2,668,950(+) ATGAA(C/T)ATGCC nc-transcript-variant, reference, synonymous-codon
rs369267978 Uncertain significance 2,669,044(+) AGGTC(A/G)CCCGT intron-variant
rs529345041 Uncertain significance 2,668,925(+) TCTTC(A/G)CCTGC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv1047874 CNV gain 25217958
nsv832308 CNV loss 17160897

Relevant External Links for CACNA1C-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-AS2 Gene

Disorders for CACNA1C-AS2 Gene

Relevant External Links for CACNA1C-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CACNA1C-AS2

No disorders were found for CACNA1C-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS2 Gene

Publications for CACNA1C-AS2 Gene

No publications were found for CACNA1C-AS2 Gene.

Products for CACNA1C-AS2 Gene

Sources for CACNA1C-AS2 Gene

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