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Aliases for CACNA1C-AS1 Gene

Subcategory (RNA class) for CACNA1C-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA1C-AS1 Gene

  • CACNA1C Antisense RNA 1 2 3 5
  • CACNA1C Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CACNA1C-AS1 Gene

Previous GeneCards Identifiers for CACNA1C-AS1 Gene

  • GC00U933925
  • GC12M002786

Summaries for CACNA1C-AS1 Gene

GeneCards Summary for CACNA1C-AS1 Gene

CACNA1C-AS1 (CACNA1C Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-AS1 Gene

Genomics for CACNA1C-AS1 Gene

Regulatory Elements for CACNA1C-AS1 Gene

Enhancers for CACNA1C-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F002691 0.6 ENCODE 5.8 -0.4 -379 2.0 SCRT1 CTCF SUZ12 POLR2A MAX ZBTB33 TBX21 CACNA1C-AS1 ENSG00000283587
GH12F002693 0.4 Ensembl 0.8 -2.1 -2101 0.6 CTCF PRDM1 CBX3P4 FKBP4 ITFG2 CACNA1C-AS1 ENSG00000283587
GH12F002682 0.5 ENCODE 0.4 +8.1 8141 0.3 CTCF ZNF654 SMC3 RAD21 FKBP4 CBX3P4 ITFG2 CACNA1C-AS1 CACNA1C-AS2
GH12F002685 0.5 ENCODE 0.4 +8.5 8501 0.2 CTCF SMC3 RAD21 CBX3P4 FKBP4 ITFG2 CACNA1C-AS1 CACNA1C-AS2
GH12F002690 0.2 Ensembl 0.8 +1.1 1100 0.2 ITFG2 FKBP4 CACNA1C-AS1 CACNA1C-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACNA1C-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CACNA1C-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001774279 -400 1601 CTCF SUZ12 POLR2A ZBTB33 TBX21

Genomic Location for CACNA1C-AS1 Gene

Chromosome:
12
Start:
2,676,001 bp from pter
End:
2,691,200 bp from pter
Size:
15,200 bases
Orientation:
Minus strand

Genomic View for CACNA1C-AS1 Gene

Genes around CACNA1C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-AS1 Gene

Proteins for CACNA1C-AS1 Gene

Post-translational modifications for CACNA1C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-AS1 Gene

Domains & Families for CACNA1C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-AS1 Gene

Function for CACNA1C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS1 Gene

Localization for CACNA1C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CACNA1C-AS1 Gene

Pathways & Interactions for CACNA1C-AS1 Gene

SuperPathways for CACNA1C-AS1 Gene

No Data Available

Interacting Proteins for CACNA1C-AS1 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-AS1 Gene

Transcripts for CACNA1C-AS1 Gene

mRNA/cDNA for CACNA1C-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACNA1C-AS1 Gene

CACNA1C antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-AS1 Gene

No ASD Table

Relevant External Links for CACNA1C-AS1 Gene

GeneLoc Exon Structure for
CACNA1C-AS1
ECgene alternative splicing isoforms for
CACNA1C-AS1

Expression for CACNA1C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-AS1 Gene

This gene is overexpressed in Colon - Sigmoid (x5.2) and Heart - Left Ventricle (x4.1).

SOURCE GeneReport for Unigene cluster for CACNA1C-AS1 Gene:

Hs.683896
genes like me logo Genes that share expression patterns with CACNA1C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CACNA1C-AS1 Gene

Orthologs for CACNA1C-AS1 Gene

Evolution for CACNA1C-AS1 Gene

ENSEMBL:
Gene Tree for CACNA1C-AS1 (if available)
TreeFam:
Gene Tree for CACNA1C-AS1 (if available)

No data available for Orthologs for CACNA1C-AS1 Gene

Paralogs for CACNA1C-AS1 Gene

No data available for Paralogs for CACNA1C-AS1 Gene

Variants for CACNA1C-AS1 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs193922615 Likely pathogenic 2,688,693(+) GGAGA(A/G/T)TCCGG intron-variant, reference, missense
rs193922616 Likely pathogenic 2,691,089(+) GGGAC(A/G/T)CGGGG nc-transcript-variant, reference, missense
rs113239186 Likely benign 2,682,556(+) TGCCA(C/T)TCCCG intron-variant, reference, synonymous-codon
rs113595214 Likely benign 2,679,449(+) AGGGC(C/T)GGTGG intron-variant, reference, synonymous-codon
rs147896322 Likely benign 2,679,471(+) ACCAC(A/G)TCAGC intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv983264 CNV duplication 23825009
nsv832308 CNV loss 17160897
nsv1047874 CNV gain 25217958
esv3367314 CNV duplication 20981092
esv2745416 CNV deletion 23290073
dgv244e214 CNV gain 21293372
dgv1344n100 CNV gain 25217958

Relevant External Links for CACNA1C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-AS1 Gene

Disorders for CACNA1C-AS1 Gene

Relevant External Links for CACNA1C-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CACNA1C-AS1

No disorders were found for CACNA1C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS1 Gene

Publications for CACNA1C-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CACNA1C-AS1 Gene

Sources for CACNA1C-AS1 Gene

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