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Aliases for CACFD1 Gene

Aliases for CACFD1 Gene

  • Calcium Channel Flower Domain Containing 1 2 3 5
  • Calcium Channel Flower Domain-Containing Protein 1 3 4
  • C9orf7 3 4
  • Chromosome 9 Open Reading Frame 7 2
  • Calcium Channel Flower Homolog 3
  • D9S2135 3
  • FLOWER 3

External Ids for CACFD1 Gene

Previous HGNC Symbols for CACFD1 Gene

  • C9orf7

Previous GeneCards Identifiers for CACFD1 Gene

  • GC09P136326

Summaries for CACFD1 Gene

GeneCards Summary for CACFD1 Gene

CACFD1 (Calcium Channel Flower Domain Containing 1) is a Protein Coding gene. Among its related pathways are Transmission across Chemical Synapses and DREAM Repression and Dynorphin Expression. GO annotations related to this gene include calcium channel activity.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACFD1 Gene

Genomics for CACFD1 Gene

Regulatory Elements for CACFD1 Gene

Enhancers for CACFD1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G133459 1.1 ENCODE 21.8 +0.5 468 2.8 HDGF FOXA2 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 CACFD1 SURF1 SURF2 SNORD36A SNORD36C MED22 RPL7A SNORD24 SNORD36B ADAMTS13
GH09G133485 1.2 Ensembl ENCODE 17 +26.5 26470 1.1 RB1 CREB3L1 AGO1 WRNIP1 ARID4B SIN3A ZNF2 ZNF48 RAD21 ZEB1 CACFD1 ADAMTS13 REXO4 ENSG00000201451 ENSG00000230064 SURF6 SURF4 STKLD1 MYMK ADAMTSL2
GH09G133428 1.2 Ensembl ENCODE 16.1 -30.6 -30603 2.4 PKNOX1 FOXA2 AGO1 ARID4B ZBTB7B ZNF121 ZNF207 MYNN PBX2 KDM1A CACFD1 TSC1 LINC00094 SURF1 EEF1A1P5 ENSG00000224992 SURF6 REXO4 GC09P133442
GH09G133416 1.5 FANTOM5 ENCODE 12.4 -42.0 -41988 3.5 CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 SURF1 SURF6 LINC00094 ADAMTS13 CACFD1 SURF2 RPL7A SNORD36C SNORD36B SNORD36A
GH09G133367 1.5 Ensembl ENCODE dbSUPER 10.3 -89.6 -89591 6.0 YY1 TCF12 ZNF121 ZNF766 GATA2 REST ZNF488 MBD2 SMARCA4 GLIS1 SURF6 SURF1 ADAMTS13 MED22 RPL7A SNORD24 SNORD36B ENSG00000201451 ENSG00000230064 GBGT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CACFD1 on UCSC Golden Path with GeneCards custom track

Promoters for CACFD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000242591 135 1401 HDGF FOXA2 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1

Genomic Location for CACFD1 Gene

Chromosome:
9
Start:
133,459,965 bp from pter
End:
133,470,848 bp from pter
Size:
10,884 bases
Orientation:
Plus strand

Genomic View for CACFD1 Gene

Genes around CACFD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACFD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACFD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACFD1 Gene

Proteins for CACFD1 Gene

  • Protein details for CACFD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UGQ2-FLOWR_HUMAN
    Recommended name:
    Calcium channel flower homolog
    Protein Accession:
    Q9UGQ2
    Secondary Accessions:
    • B7Z3T8
    • B7Z5E1
    • F5GXX4
    • Q5SXD4
    • Q8NBM6

    Protein attributes for CACFD1 Gene

    Size:
    172 amino acids
    Molecular mass:
    18470 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CACFD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CACFD1 Gene

Post-translational modifications for CACFD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CACFD1 Gene

Domains & Families for CACFD1 Gene

Protein Domains for CACFD1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CACFD1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9UGQ2

UniProtKB/Swiss-Prot:

FLOWR_HUMAN :
  • Belongs to the calcium channel flower family.
Family:
  • Belongs to the calcium channel flower family.
genes like me logo Genes that share domains with CACFD1: view

No data available for Gene Families for CACFD1 Gene

Function for CACFD1 Gene

Gene Ontology (GO) - Molecular Function for CACFD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005262 calcium channel activity TAS --
GO:0005515 protein binding IPI 21516116
genes like me logo Genes that share ontologies with CACFD1: view
genes like me logo Genes that share phenotypes with CACFD1: view

Animal Models for CACFD1 Gene

MGI Knock Outs for CACFD1:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CACFD1 Gene

Localization for CACFD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CACFD1 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CACFD1 gene
Compartment Confidence
plasma membrane 5
nucleus 2

Gene Ontology (GO) - Cellular Components for CACFD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CACFD1: view

Pathways & Interactions for CACFD1 Gene

genes like me logo Genes that share pathways with CACFD1: view

Gene Ontology (GO) - Biological Process for CACFD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0016192 vesicle-mediated transport IBA --
GO:0051899 membrane depolarization TAS --
GO:0070588 calcium ion transmembrane transport IEA --
genes like me logo Genes that share ontologies with CACFD1: view

No data available for SIGNOR curated interactions for CACFD1 Gene

Drugs & Compounds for CACFD1 Gene

No Compound Related Data Available

Transcripts for CACFD1 Gene

Unigene Clusters for CACFD1 Gene

Calcium channel flower domain containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACFD1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b · 10c · 10d · 10e · 10f
SP1: - - - - - - - -
SP2: - - - - - - - - -
SP3: - - - - - - -
SP4: - - - - - - - -
SP5: - - - - - - - - - -
SP6: - - - - - -
SP7: - - - - -
SP8:
SP9: - - - - - - - - - - -
SP10: - - - - -
SP11: - - - -
SP12: - - -

Relevant External Links for CACFD1 Gene

GeneLoc Exon Structure for
CACFD1
ECgene alternative splicing isoforms for
CACFD1

Expression for CACFD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACFD1 Gene

mRNA differential expression in normal tissues according to GTEx for CACFD1 Gene

This gene is overexpressed in Liver (x4.6).

Protein differential expression in normal tissues from HIPED for CACFD1 Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (35.6), Liver (22.7), and Testis (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CACFD1 Gene



Protein tissue co-expression partners for CACFD1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CACFD1 Gene:

CACFD1

SOURCE GeneReport for Unigene cluster for CACFD1 Gene:

Hs.62003

Evidence on tissue expression from TISSUES for CACFD1 Gene

  • Nervous system(4.8)
  • Pancreas(4.1)
genes like me logo Genes that share expression patterns with CACFD1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACFD1 Gene

Orthologs for CACFD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CACFD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CACFD1 34 35
  • 99.57 (n)
cow
(Bos Taurus)
Mammalia CACFD1 34
  • 86.75 (n)
MGC139698 35
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CACFD1 34 35
  • 81.54 (n)
rat
(Rattus norvegicus)
Mammalia Cacfd1 34
  • 79.63 (n)
mouse
(Mus musculus)
Mammalia Cacfd1 34 16 35
  • 78.71 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CACFD1 35
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CACFD1 35
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves C17H9ORF7 34 35
  • 69.64 (n)
lizard
(Anolis carolinensis)
Reptilia CACFD1 35
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cacfd1 34
  • 70.34 (n)
African clawed frog
(Xenopus laevis)
Amphibia MGC68663 34
zebrafish
(Danio rerio)
Actinopterygii si:ch73-209e20.5 34
  • 65.99 (n)
CACFD1 35
  • 55 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.4696 34
fruit fly
(Drosophila melanogaster)
Insecta fwe 35
  • 27 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F20D1.1 35
  • 30 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3337 35
  • 31 (a)
OneToOne
Species where no ortholog for CACFD1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CACFD1 Gene

ENSEMBL:
Gene Tree for CACFD1 (if available)
TreeFam:
Gene Tree for CACFD1 (if available)

Paralogs for CACFD1 Gene

No data available for Paralogs for CACFD1 Gene

Variants for CACFD1 Gene

Sequence variations from dbSNP and Humsavar for CACFD1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs387906343 Pathogenic 133,459,039(+) AGTCA(-/A)GAGAG nc-transcript-variant, upstream-variant-2KB, reference, frameshift-variant
rs3094374 Likely benign 133,458,126(-) TGTGA(A/C/G/T)TCTGG intron-variant, upstream-variant-2KB
rs782145338 Uncertain significance 133,459,005(+) CACAG(C/T)GTTCC nc-transcript-variant, upstream-variant-2KB, reference, missense
rs1055432 Benign 133,459,117(+) TGGAC(A/C/T)CTCCA nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs281875308 untested 133,458,023(+) ACGCA(C/T)GGATT intron-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CACFD1 Gene

Variant ID Type Subtype PubMed ID
dgv1243n67 CNV gain 20364138
esv2739138 CNV deletion 23290073
nsv1125319 OTHER inversion 24896259

Variation tolerance for CACFD1 Gene

Gene Damage Index Score: 1.55; 29.96% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CACFD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACFD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CACFD1 Gene

Disorders for CACFD1 Gene

Relevant External Links for CACFD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CACFD1

No disorders were found for CACFD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACFD1 Gene

Publications for CACFD1 Gene

  1. A synaptic vesicle-associated Ca2+ channel promotes endocytosis and couples exocytosis to endocytosis. (PMID: 19737521) Yao C.K. … Bellen H.J. (Cell 2009) 2 3 64
  2. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for CACFD1 Gene

Sources for CACFD1 Gene

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