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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CABS1 Gene

protein-coding   GIFtS: 40
GCID: GC04P071202

calcium-binding protein, spermatid-specific 1

(Previous name: chromosome 4 open reading frame 35 )
(Previous symbol: C4orf35)
  Search for CABS1
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Biological research products
for CABS1    

Aliases
for CABS1 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Calcium-Binding Protein, Spermatid-Specific 11 2     FLJ328971
C4orf351 2 3     Chromosome 4 Open Reading Frame 351
CLPH1 2     Calcium-Binding And Spermatid-Specific Protein 12
NYD-SP261 2     Calcium-Binding Protein, Sperm-Specific 12
Testis Development Protein NYD-SP262 3     Casein-Like Phosphoprotein2

External Ids:    HGNC: 307101   Entrez Gene: 854382   Ensembl: ENSG000001453097   UniProtKB: Q96KC93   

Export aliases for CABS1 gene to outside databases


Summaries
for CABS1 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
  --

Genomic Views
for CABS1 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_022778.16  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for CABS1
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CABS1 promoter sequence
   Search SABiosciences Chromatin IP Primers for CABS1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CABS1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q13.3   Ensembl cytogenetic band:  4q13.3   HGNC cytogenetic band: 4q13.3

CABS1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CABS1 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P071202:  view genomic region     (about GC identifiers)

Start:
 71,200,671 bp from pter      End:
 71,202,833 bp from pter
Size:
 2,163 bases      Orientation:
 plus strand

Proteins
for CABS1 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: CABS1_HUMAN, Q96KC9 (See protein sequence)
Recommended Name: Calcium-binding and spermatid-specific protein 1  
Size: 395 amino acids; 43003 Da
Cofactor: Calcium (By similarity)
Subcellular location: Cytoplasm (By similarity). Mitochondrion (By similarity). Cell projection, cilium, flagellum (By
similarity). Note=Detected in mitochondria of step 17 to 18 spermatids. Associated with the mitochondrial inner
membrane in step 18 spermatids (By similarity)
Secondary accessions: B2RCB5 Q86UE0 Q96M17

Explore the universe of human proteins at neXtProt for CABS1: NX_Q96KC9

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96KC9

    • CABS1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_149113.3  
    ENSEMBL proteins: 
     ENSP00000273936  

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    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm ----
    GO:0005743mitochondrial inner membrane IEA--
    GO:0019861flagellum ----
    GO:0031514motile cilium ISS--


    CABS1 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for CABS1 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    CABS1 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR026118 Ca-bd_spermatid

    Graphical View of Domain Structure for InterPro Entry Q96KC9

    ProtoNet protein and cluster: Q96KC9


    Function
    for CABS1 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    miRNA
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005509calcium ion binding ISS--


    CABS1 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for CABS1:
     G2 arrest  Increased G2M DNA content 


    Pathways & Interactions
    for CABS1 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CABS1

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007283spermatogenesis IEA--


    CABS1 for ontologies           About GeneDecksing



    Drugs & Compounds
    for CABS1 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CABS1
    Search CenterWatch for drugs/clinical trials and news about CABS1 

    Transcripts
    for CABS1 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for CABS1 gene: 
    NM_033122.3  

    Unigene Cluster for CABS1:

    Calcium-binding protein, spermatid-specific 1
    Hs.120316  [show with all ESTs]
    Unigene Representative Sequence: BC046111
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000273936(uc003hff.3)

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    hsa-miR-186 hsa-miR-570
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    Inhib. RNA
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    Additional cDNA sequence: 

    AF380838.1 AK057459.1 AK315022.1 BC034492.1 BC046111.1 

    3 DOTS entries:

    DT.109044  DT.121249294  DT.95167173 

    24/54 AceView cDNA sequences (see all 54):

    AA732886 BP368809 BI550120 BU567762 BQ429055 BI827152 BP369874 AI082850 
    NM_033122 BP370946 BI559496 BU569924 BP369928 AA778609 BC034492 AI004036 
    BP371223 BG720401 BQ429924 AI214833 BP370534 AW303569 BP368995 AA927638 

    GeneLoc Exon Structure


    Expression
    for CABS1 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CABS1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TAGAATTGTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    CABS1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Definitive endoderm-like cells (A scalable, suspensi...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See CABS1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CABS1

    SOURCE GeneReport for Unigene cluster: Hs.120316
        SABiosciences Custom PCR Arrays for CABS1
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    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CABS1

    Orthologs
    for CABS1 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of human and mouse.

    Orthologs for CABS1 gene from 1/6 species (see all 6)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Cabs11 , 5 RIKEN cDNA 4931407G18 gene5
    calcium binding protein, spermatid specific 11    		 75.06(n)1
    61.95(a)1    		   5 (43.56 cM)5
    709771  NM_027631.21  NP_081907.11 
     879794515 


    ENSEMBL Gene Tree for CABS1 (if available)
    TreeFam Gene Tree for CABS1 (if available) 

    Paralogs
    for CABS1 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    		  --

    Genomic Variants
    for CABS1 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
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    DNA2.0 Custom Variant and Variant Library Synthesis for CABS1

    Disorders / Diseases
    for CABS1 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    		   --

    Publications
    for CABS1 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CABS1 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with CABS1)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. CLPH, a novel casein kinase 2-phosphorylated disorder ed protein, is specifically associated with postmeiotic germ cells in rat sperm atogenesis. (PubMed id 19271754)1, 3 Calvel P....Pineau C. (2009)
    2. CABS1 is a novel calcium-binding protein specifically expressed in elongate spermatids of mice. (PubMed id 19208547)1, 3 Kawashima A....Okamura N. (2009)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
    6. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    7. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W....Wilson R.K. (2005)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    9. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

    External Searches for CABS1 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing CABS1 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 85438 HGNC: 30710 AceView: NYD-SP26 Ensembl:ENSG00000145309 euGenes: HUgn85438
    ECgene: CABS1 H-InvDB: CABS1

    Other Databases showing CABS1 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing CABS1 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CABS1 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for CABS1 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for CABS1 gene:
    Search GeneIP for patents involving CABS1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    for CABS1 gene

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    About This Section

     
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    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

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    VWF
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    von Willebrand factor
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