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Aliases & Descriptions for CA9
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CA-IX 3 | | CAIX 1, 2, 3 | | EC 4.2.1.1 3 | | G250 3 | | MN 1, 2, 3, 5 | | OTTHUMP00000022773 2 | | P54/58N 3 | | pMW1 3 |
| | | Descriptions |
|---|
| Carbonate dehydratase IX 3 | | Membrane antigen MN 3 | | RCC-associated antigen G250 3 | | RCC-associated protein G250 2 | | Renal cell carcinoma-associated antigen G250 3 | | carbonic anhydrase IX 2, 3 | | carbonic dehydratase 2 |
|
| | Search outside databases for aliases for CA9 genePrevious GC identifers: GC09P035986 GC09P035843 |
Summaries for CA9(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CA9: Carbonic anhydrases (CAs) are a large family of zinc metalloenzymes that catalyze the reversible hydration of carbon dioxide. They participate in a variety of biological processes, including respiration, calcification, acid-base balance, bone resorption, and the formation of aqueous humor, cerebrospinal fluid, saliva, and gastric acid. They show extensive diversity in tissue distribution and in their subcellular localization. CA IX is a transmembrane protein and the only tumor-associated carbonic anhydrase isoenzyme known. It is expressed in all clear-cell renal cell carcinoma, but is not detected in normal kidney or most other normal tissues. It may be involved in cell proliferation and transformation. This gene was mapped to 17q21.2 by fluorescence in situ hybridization, however, radiation hybrid mapping localized it to 9p13-p12. [provided by RefSeq] UniProtKB/Swiss-Prot: CAH9_HUMAN, Q16790Function: Reversible hydration of carbon dioxide. Participates in pH regulation. May be involved in the control of cell proliferation and transformation. Appears to be a novel specific biomarker for a cervical neoplasiaGene Wiki entry for CA9 |
Genomic Location for CA9
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CA9 gene 
Entrez Gene cytogenetic band: 9p13-p12 Ensembl cytogenetic band: 9p13.3 HGNC cytogenetic band: 9p12CA9 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09P035663:
(about GC identifiers)
Start:
|
35,663,853 bp from pter |
End:
|
35,671,152 bp from pter |
Size:
|
7,300 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000009.10 NT_008413.17
| Proteins for CA9
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CAH9_HUMAN, Q16790 (See
protein sequence)Recommended Name: Carbonic anhydrase 9 precursor Size: 459 amino acids; 49698 Da
Cofactor: Zinc (By similarity)
Subunit: Forms oligomers linked by disulfide bonds
Subcellular location: Nucleus. Nucleus, nucleolus. Cell membrane; Single-pass type I membrane protein. Cell projection, microvillus membrane; Single-pass type I membrane protein. Note=Found on the surface microvilli and in the nucleus, particularly in nucleolus
PDB structures from and Proteopedia :2HKF (3D)
 
Secondary accessions: Q5T4R1Post-translational modifications:
Asn-346 bears high-mannose type glycan structures1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001207.2
ENSEMBL proteins: ENSP00000367608
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CA9: Assays for CA9: | Protein
Domains/ Families for CA9(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q16790
ProtoNet protein and cluster: Q16790 1 Blocks protein family: IPB001148 Carbonic anhydrase
UniProtKB/Swiss-Prot: CAH9_HUMAN, Q16790Similarity: Belongs to the alpha-carbonic anhydrase family | Gene Function for CA9
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001216
Applied Biosystems Silencer® siRNAs for CA9
Sigma-Aldrich siRNA and siRNA Panels for CA9  Sigma-Aldrich shRNA for CA9  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001216                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001216                                  untagged cDNA clone in CMV expression vector: NM_001216 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001216
UniProtKB/Swiss-Prot: CAH9_HUMAN, Q16790Function: Reversible hydration of carbon dioxide. Participates in pH regulation. May be involved in the control of cell proliferation and transformation. Appears to be a novel specific biomarker for a cervical neoplasiaCatalytic activity: H(2)CO(3) = CO(2) + H(2)OInduction: By hypoxiaEnzyme Number (IUBMB): EC 4.2.1.1 Genatlas biochemistry entry for CA9:carbonic anhydrase 9,MN/CA antigen expressed in Hela cells and some human carcinomas3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Car9):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for CA9
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for CA9 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for CA9 
5/13 Interacting proteins for CA9 (ENSP000003676083) via UniProtKB, MINT, and/or STRING (see all 13
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0002009 | morphogenesis of an epithelium |
IEA | -- | | GO:0006730 | one-carbon compound metabolic process |
IEA | -- | | GO:0046903 | secretion |
IEA | -- | About this table
|
Drugs & Compounds for CA9(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for CA9: Inhibitor |
Browse Tocris compounds for CA9 10/13 Novoseek chemical compound relationships for CA9 gene (see all 13
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| pimonidazole |
88.77 |
45 |
16618579 (5), 16242253 (4), 12460928 (4), 16024110 (4) (see all 16) |
| bicarbonate |
42.98 |
10 |
17652430 (2), 15010840 (2), 11310605 (1), 15500003 (1) (see all 7) |
| carbon dioxide |
42.21 |
10 |
16310354 (1), 15951534 (1), 15500003 (1), 14567991 (1) (see all 8) |
| oxygen |
34.66 |
20 |
16098620 (2), 17512623 (2), 16243791 (2), 12937836 (2) (see all 12) |
| glucose |
26.86 |
38 |
17382701 (4), 15010840 (2), 14520462 (1), 16098620 (1) (see all 26) |
| p003 |
5.71 |
1 |
12618881 (1) |
| tyrosine |
4.44 |
2 |
16310354 (2) |
| calcium |
3.10 |
3 |
15322093 (1), 18381358 (1), 14567991 (1) |
| hydrogen |
0.00 |
3 |
14712082 (1), 11676494 (1) |
| progesterone |
0.00 |
3 |
18194560 (2), 17085655 (1) |
About this table
|
Transcripts for CA9(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001216
Sigma-Aldrich siRNA and siRNA Panels for CA9  Sigma-Aldrich shRNA for CA9  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001216 REFSEQ mRNAs for CA9 gene: NM_001216.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001216               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001216                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001216                                  untagged cDNA clone in CMV expression vector: NM_001216  Additional cDNA sequence: AJ010588.1 BC014950.1 CR590646.1 CR597234.1 CR616345.1 CR620502.1 EF122496.1 X66839.1 7 DOTS entries: DT.208212 DT.100745009 DT.97826490 DT.97837714 DT.100751488 DT.121152882 DT.91730964 24/78 AceView cDNA sequences (see all 78
):BM052971 CK903817 BM052696 BM052891 BM052647 CR616345 AL542336 NM_001216 AW449513 CR590646 BI964215 X66839 AI307631 AI925646 AI791726 AL558378 CR597234 BI963901 AL554705 BM826222 AW136118 CR620502 BG386425 AI769526
highest scoring ESTs for CA9:X66839 AA879425 AI023541 AI032380 AI241681 AI318570 AI400286 AI538585 AI760914 AI769526 Unigene Cluster for CA9: Carbonic anhydrase IX Hs.63287 [show with all ESTs]Unigene Representative Sequence: BC014950
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for CA9
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10 | ^ | 11 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP4: | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CA9
1 Ensembl transcript including schematic representation: ENST00000378357
|
Expression for CA9
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CA9 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CA9
1 / 2 / 3 3 probe-sets matching CA9 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCTCCCCTGT
SOURCE GeneReport for Unigene cluster: Hs.63287
Expression variation in blood from EXPOLDB for CA9 UniProtKB/Swiss-Prot: CAH9_HUMAN, Q16790Tissue specificity: Expressed primarily in carcinoma cells lines. Expression is restricted to very few normal tissues and the most abundant expression is found in the epithelial cells of gastric mucosa |
Orthologs for CA9
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CA9 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for CA9
ENSEMBL Gene Tree for CA9 | Paralogs for CA9(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CA9 gene
- CA122 CA62 CA142
|
SNPs/Variants for CA9(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CA9 (up to first 250kb)
|
Disorders & Mutations for CA9
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603179
10/43 Novoseek disease relationships for CA9 gene (see all 43
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| renal clear cell carcinoma |
81.66 |
21 |
17382701 (3), 15126876 (2), 17947723 (2), 18695901 (2) (see all 11) |
| carcinoma renal cell |
76.25 |
34 |
17382701 (2), 16905977 (2), 16042714 (1), 15717944 (1) (see all 28) |
| tumors |
64.63 |
353 |
16024110 (8), 11522632 (7), 19074859 (6), 16428489 (6) (see all 99) |
| metastatic renal cell carcinoma |
63.41 |
2 |
12941820 (1), 16648493 (1) |
| aggressiveness |
60.84 |
1 |
15935515 (1) |
| renal cancer |
60.22 |
12 |
15897568 (4), 12576453 (2), 16310354 (1), 18430120 (1) (see all 5) |
| carcinoma |
51.01 |
48 |
14572156 (3), 18941400 (3), 9395919 (2), 15754010 (2) (see all 27) |
| solid tumor |
50.62 |
5 |
12154057 (1), 16416108 (1), 17724612 (1) |
| neck cancer |
49.50 |
2 |
11705854 (2) |
| cervical carcinoma |
47.91 |
6 |
12687273 (3), 14654550 (1), 18055005 (1) |
About this table
Human Genome Epidemiology Navigator: CA9 (1 document)
|
Medical News for CA9(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CA9 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/298 PubMed articles for CA9 gene (see all 298
):- Cloning and characterization of MN, a human tumor-associated protein with a domain homologous to carbonic anhydrase and a putative helix- loop-helix DNA binding segment. (PubMed id 8084592)1, 3, 4 Pastorek J.... Kettmann R. (1994)
- Biochemical characterization of CA IX, one of the most active carbonic anhydrase isozymes. (PubMed id 18703501)1, 3, 4 Hilvo M....Parkkila S. (2008)
- Molecular cloning and immunogenicity of renal cell carcinoma- associated antigen G250. (PubMed id 10709109)1, 3, 4 Grabmaier K.... Oosterwijk E. (2000)
- Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)3, 4 Zhang Z. and Henzel W.J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Radiation hybrid mapping of the human MN/CA9 locus to chromosome band 9p12-p13. (PubMed id 9787087)2, 3 Nakagawa Y....Yoshikawa K. (1998)
- Human MN/CA9 gene, a novel member of the carbonic anhydrase family: structure and exon to protein domain relationships. (PubMed id 8661007)2, 3 Opavsky R....Pastorek J. (1996)
- Expression of MaTu-MN protein in human tumor cultures and in clinical specimens. (PubMed id 8486430)3, 4 Zavada J....Zelnik V. (1993)
- A novel quasi-viral agent, MaTu, is a two-component system. (PubMed id 1312272)3, 4 Pastorekova S.... Zavada J. (1992)
- Redox state and carbonic anhydrase isozyme IX expression in human renal cell carcinoma: biochemical and morphological investigations. (PubMed id 15500003)1, 3 Tripodi S.A....Puccetti L. (2004)
|
Search for CA9
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CA9
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CA9
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CA9(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CA9(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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