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Aliases for CA5BP1 Gene

Aliases for CA5BP1 Gene

  • Carbonic Anhydrase 5B Pseudogene 1 2 3 5
  • Carbonic Anhydrase VB Pseudogene 1 2 3
  • Carbonic Dehydratase 2 3
  • CA5BL 3 4
  • Similar To Carbonic Anhydrase VB, Mitochondrial Precursor 2
  • Carbonic Anhydrase VB Pseudogene 2
  • Carbonic Anhydrase VB-Like 2
  • CA-VB-Like Protein 4
  • PRO2325 3
  • CA5BP 3
  • CA5B 4

External Ids for CA5BP1 Gene

Previous HGNC Symbols for CA5BP1 Gene

  • CA5BL
  • CA5BP

Summaries for CA5BP1 Gene

GeneCards Summary for CA5BP1 Gene

CA5BP1 (Carbonic Anhydrase 5B Pseudogene 1) is a Pseudogene. GO annotations related to this gene include carbonate dehydratase activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CA5BP1 Gene

Genomics for CA5BP1 Gene

Regulatory Elements for CA5BP1 Gene

Enhancers for CA5BP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF015748 1.3 FANTOM5 Ensembl ENCODE 13.1 +77.3 77251 6.8 PKNOX1 KLF1 KLF17 FEZF1 ZNF843 ATF2 POLR2A PRDM10 KLF7 SPI1 CA5B ZRSR2 CA5BP1 PIGA TMEM27 GC0XP015773 ENSG00000200620
GH0XF015744 1.1 Ensembl ENCODE 12.7 +70.0 69985 1.8 ARID4B DMAP1 ZNF48 RARA GATA4 CREM THAP11 HMG20B SP5 CEBPB ENSG00000200620 CA5B CA5BP1 GC0XP015773
GH0XF015789 1 ENCODE 12.6 +116.0 115976 2.6 HDGF ATF1 PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF263 CA5B CA5BP1 ZRSR2 VEGFD AP1S2
GH0XF015815 0.9 Ensembl ENCODE 12.7 +141.6 141559 1.8 CTCF MTA2 TEAD4 MAX RAD21 ATF2 HIC1 JUND IKZF1 SMC3 ZRSR2 CA5B CA5BP1 AP1S2
GH0XF015737 0.9 ENCODE 12.5 +63.4 63382 2.2 HDGF TBP PKNOX1 INSM2 KLF17 SIN3A RFX5 YY1 GLIS2 ZNF366 TMEM27 CA5B CA5BP1 ENSG00000200620 VEGFD GC0XP015773
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CA5BP1 on UCSC Golden Path with GeneCards custom track

Promoters for CA5BP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001488584 684 3201 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 KLF13 SP3

Genomic Location for CA5BP1 Gene

Chromosome:
X
Start:
15,674,916 bp from pter
End:
15,703,724 bp from pter
Size:
28,809 bases
Orientation:
Plus strand

Genomic View for CA5BP1 Gene

Genes around CA5BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CA5BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CA5BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CA5BP1 Gene

Proteins for CA5BP1 Gene

  • Protein details for CA5BP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WTZ4-CA5BL_HUMAN
    Recommended name:
    Putative inactive carbonic anhydrase 5B-like protein
    Protein Accession:
    Q8WTZ4
    Secondary Accessions:
    • A6NEZ4

    Protein attributes for CA5BP1 Gene

    Size:
    195 amino acids
    Molecular mass:
    22622 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CA5BP1 Gene

Post-translational modifications for CA5BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CA5BP1 Gene

Domains & Families for CA5BP1 Gene

Protein Domains for CA5BP1 Gene

Suggested Antigen Peptide Sequences for CA5BP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WTZ4

UniProtKB/Swiss-Prot:

CA5BL_HUMAN :
  • Belongs to the alpha-carbonic anhydrase family.
Family:
  • Belongs to the alpha-carbonic anhydrase family.
genes like me logo Genes that share domains with CA5BP1: view

No data available for Gene Families for CA5BP1 Gene

Function for CA5BP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CA5BP1 Gene

Localization for CA5BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CA5BP1 Gene

Pathways & Interactions for CA5BP1 Gene

SuperPathways for CA5BP1 Gene

No Data Available

Interacting Proteins for CA5BP1 Gene

Gene Ontology (GO) - Biological Process for CA5BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CA5BP1 Gene

Transcripts for CA5BP1 Gene

Unigene Clusters for CA5BP1 Gene

Carbonic anhydrase VB pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CA5BP1 Gene

No ASD Table

Relevant External Links for CA5BP1 Gene

GeneLoc Exon Structure for
CA5BP1
ECgene alternative splicing isoforms for
CA5BP1

Expression for CA5BP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CA5BP1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CA5BP1 Gene



NURSA nuclear receptor signaling pathways regulating expression of CA5BP1 Gene:

CA5BP1

SOURCE GeneReport for Unigene cluster for CA5BP1 Gene:

Hs.732244
genes like me logo Genes that share expression patterns with CA5BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CA5BP1 Gene

Orthologs for CA5BP1 Gene

Evolution for CA5BP1 Gene

ENSEMBL:
Gene Tree for CA5BP1 (if available)
TreeFam:
Gene Tree for CA5BP1 (if available)

No data available for Orthologs for CA5BP1 Gene

Paralogs for CA5BP1 Gene

No data available for Paralogs for CA5BP1 Gene

Variants for CA5BP1 Gene

Sequence variations from dbSNP and Humsavar for CA5BP1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs10127209 -- 15,676,531(+) CCCTT(C/T)TTCTT intron-variant, upstream-variant-2KB
rs10521649 -- 15,676,654(+) TATTC(A/G)TAGCC intron-variant, upstream-variant-2KB
rs1062111 -- 15,698,285(+) AACTA(A/C)ACTGT intron-variant
rs10709736 -- 15,675,425(+) AACGT(-/G)GGGGG intron-variant
rs111608497 -- 15,695,698(+) TATAG(A/G)AATTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CA5BP1 Gene

Variant ID Type Subtype PubMed ID
esv2739978 CNV deletion 23290073
esv2758862 CNV loss 17122850

Relevant External Links for CA5BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CA5BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CA5BP1 Gene

Disorders for CA5BP1 Gene

Relevant External Links for CA5BP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CA5BP1

No disorders were found for CA5BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CA5BP1 Gene

Publications for CA5BP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Expressed sequence tag analysis of adult human lens for the NEIBank project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G. … Peterson K. (Mol. Vis. 2002) 3 64

Products for CA5BP1 Gene

Sources for CA5BP1 Gene

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