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Aliases for CA5BP1 Gene

Aliases for CA5BP1 Gene

  • Carbonic Anhydrase VB Pseudogene 1 2 3
  • Carbonic Dehydratase 2 3
  • CA5BL 3 4
  • Similar To Carbonic Anhydrase VB 2
  • Carbonic Anhydrase VB Pseudogene 2
  • Carbonic Anhydrase VB-Like 2
  • Mitochondrial Precursor 2
  • CA-VB-Like Protein 4
  • PRO2325 3
  • CA5BP 3
  • CA5B 4

External Ids for CA5BP1 Gene

Previous HGNC Symbols for CA5BP1 Gene

  • CA5BL
  • CA5BP

Summaries for CA5BP1 Gene

GeneCards Summary for CA5BP1 Gene

CA5BP1 (Carbonic Anhydrase VB Pseudogene 1) is a Pseudogene. Among its related pathways are Metabolism and Nitrogen metabolism. GO annotations related to this gene include carbonate dehydratase activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CA5BP1 Gene

Genomics for CA5BP1 Gene

Genomic Location for CA5BP1 Gene

Start:
15,674,916 bp from pter
End:
15,703,724 bp from pter
Size:
28,809 bases
Orientation:
Plus strand

Genomic View for CA5BP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CA5BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CA5BP1 Gene

No data available for Regulatory Elements for CA5BP1 Gene

Proteins for CA5BP1 Gene

  • Protein details for CA5BP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WTZ4-CA5BL_HUMAN
    Recommended name:
    Putative inactive carbonic anhydrase 5B-like protein
    Protein Accession:
    Q8WTZ4
    Secondary Accessions:
    • A6NEZ4

    Protein attributes for CA5BP1 Gene

    Size:
    195 amino acids
    Molecular mass:
    22622 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CA5BP1 Gene

Proteomics data for CA5BP1 Gene at MOPED

Post-translational modifications for CA5BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CA5BP1 Gene

Domains for CA5BP1 Gene

Protein Domains for CA5BP1 Gene

Suggested Antigen Peptide Sequences for CA5BP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WTZ4

UniProtKB/Swiss-Prot:

CA5BL_HUMAN :
  • Q8WTZ4
Family:
  • Belongs to the alpha-carbonic anhydrase family.
genes like me logo Genes that share domains with CA5BP1: view

No data available for Gene Families for CA5BP1 Gene

Function for CA5BP1 Gene

Gene Ontology (GO) - Molecular Function for CA5BP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004089 carbonate dehydratase activity IEA --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with CA5BP1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CA5BP1 Gene

Localization for CA5BP1 Gene

Gene Ontology (GO) - Cellular Components for CA5BP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with CA5BP1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for CA5BP1 Gene

Pathways for CA5BP1 Gene

genes like me logo Genes that share pathways with CA5BP1: view

Pathways by source for CA5BP1 Gene

2 Reactome pathways for CA5BP1 Gene
1 KEGG pathway for CA5BP1 Gene

Interacting Proteins for CA5BP1 Gene

Gene Ontology (GO) - Biological Process for CA5BP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008152 metabolic process IEA --
genes like me logo Genes that share ontologies with CA5BP1: view

Transcripts for CA5BP1 Gene

Unigene Clusters for CA5BP1 Gene

Carbonic anhydrase VB pseudogene 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CA5BP1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CA5BP1 Gene

No ASD Table

Relevant External Links for CA5BP1 Gene

GeneLoc Exon Structure for
CA5BP1
ECgene alternative splicing isoforms for
CA5BP1

Expression for CA5BP1 Gene

mRNA expression in normal human tissues for CA5BP1 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CA5BP1 Gene

SOURCE GeneReport for Unigene cluster for CA5BP1 Gene Hs.732244

genes like me logo Genes that share expressions with CA5BP1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CA5BP1 Gene

Orthologs for CA5BP1 Gene

Evolution for CA5BP1 Gene

ENSEMBL:
Gene Tree for CA5BP1 (if available)
TreeFam:
Gene Tree for CA5BP1 (if available)

No data available for Orthologs for CA5BP1 Gene

Paralogs for CA5BP1 Gene

No data available for Paralogs for CA5BP1 Gene

Variants for CA5BP1 Gene

Sequence variations from dbSNP and Humsavar for CA5BP1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs4060 -- 15,688,707(+) GATCG(A/C)CAGTC nc-transcript-variant
rs14287 -- 15,702,937(-) CAGTG(C/T)TTCCT nc-transcript-variant
rs997294 -- 15,676,066(+) TGTCT(A/C)TTAAA intron-variant
rs997300 -- 15,676,365(-) TCAGA(A/G)CAGCA intron-variant
rs1062111 -- 15,698,285(+) AACTA(A/C)ACTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CA5BP1 Gene

Variant ID Type Subtype PubMed ID
dgv2439e1 CNV Complex 17122850
esv2739978 CNV Deletion 23290073

Relevant External Links for CA5BP1 Gene

HapMap Linkage Disequilibrium report
CA5BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CA5BP1 Gene

Disorders for CA5BP1 Gene

No disorders were found for CA5BP1 Gene.

No data available for UniProtKB/Swiss-Prot for CA5BP1 Gene

Publications for CA5BP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4
  5. Expressed sequence tag analysis of adult human lens for the NEIBank project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G. … Peterson K. (Mol. Vis. 2002) 3

Products for CA5BP1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CA5BP1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CA5BP1
    • Block miRNA regulation of CA5BP1 using miScript Target Protectors

    Sources for CA5BP1 Gene

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