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Aliases for CA5A Gene

Aliases for CA5A Gene

  • Carbonic Anhydrase 5A 2 3 5
  • Carbonic Anhydrase VA, Mitochondrial 2 3
  • Carbonate Dehydratase VA 3 4
  • EC 4.2.1.1 4 61
  • CA-VA 3 4
  • CA5 3 4
  • Carbonic Anhydrase 5A, Mitochondrial 3
  • Carbonic Anhydrase V, Mitochondrial 3
  • Carbonic Anhydrase VA 4
  • Carbonic Dehydratase 3
  • GS1-21A4.1 3
  • CA5AD 3
  • CAVA 3
  • CAV 3

External Ids for CA5A Gene

Previous HGNC Symbols for CA5A Gene

  • CA5

Previous GeneCards Identifiers for CA5A Gene

  • GC16P028774
  • GC16M088952
  • GC16M087662
  • GC16M087703
  • GC16M086479
  • GC16M087921
  • GC16M073662

Summaries for CA5A Gene

Entrez Gene Summary for CA5A Gene

  • Carbonic anhydrases (CAs) are a large family of zinc metalloenzymes that catalyze the reversible hydration of carbon dioxide. They participate in a variety of biological processes, including respiration, calcification, acid-base balance, bone resorption, and the formation of aqueous humor, cerebrospinal fluid, saliva, and gastric acid. They show extensive diversity in tissue distribution and in their subcellular localization. CA VA is localized in the mitochondria and expressed primarily in the liver. It may play an important role in ureagenesis and gluconeogenesis. CA5A gene maps to chromosome 16q24.3 and an unprocessed pseudogene has been assigned to 16p12-p11.2. [provided by RefSeq, Jul 2008]

GeneCards Summary for CA5A Gene

CA5A (Carbonic Anhydrase 5A) is a Protein Coding gene. Diseases associated with CA5A include Hyperammonemia Due To Carbonic Anhydrase Va Deficiency and Carbonic Anhydrase Va Deficiency. Among its related pathways are Nitrogen metabolism and Metabolism. GO annotations related to this gene include carbonate dehydratase activity. An important paralog of this gene is CA5B.

UniProtKB/Swiss-Prot for CA5A Gene

  • Reversible hydration of carbon dioxide. Low activity.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CA5A Gene

Genomics for CA5A Gene

Regulatory Elements for CA5A Gene

Enhancers for CA5A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G087895 1.5 FANTOM5 Ensembl ENCODE 21.4 +39.8 39750 3.2 HDAC1 PKNOX1 RAD21 TCF12 EGR1 RELB IKZF2 CREM EGR2 PAF1 CA5A BANP PIEZO1 KLHDC4 ENSG00000260603 PIR40099
GH16G087787 1.9 FANTOM5 Ensembl ENCODE dbSUPER 16.8 +146.4 146428 4.9 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 FOS CTU2 CA5A BANP LOC100289580 KLHDC4 FBXO31 LOC102724467 ENSG00000260177
GH16G087962 1.7 FANTOM5 Ensembl ENCODE dbSUPER 13 -28.4 -28435 5.2 ELF3 FOXA2 MLX ARID4B DMAP1 ZSCAN9 GATA2 FOS THAP11 MXD4 CA5A BANP LOC400553 PIR49178
GH16G087864 1.8 FANTOM5 ENCODE dbSUPER 8.3 +67.2 67201 8.8 HDGF PKNOX1 FOXA2 MLX CREB3L1 ARNT ZFP64 ARID4B SIN3A FEZF1 KLHDC4 CTU2 TRAPPC2L CA5A BANP ZCCHC14 MAP1LC3B FBXO31 SLC7A5 PIR45032
GH16G087959 1.1 Ensembl ENCODE dbSUPER 13 -23.2 -23232 1.2 ZNF263 KLF1 ZBTB8A ZIC2 POLR2A IKZF1 ZNF341 ZBTB33 ZNF423 CA5A BANP LOC400553 PIR49178
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CA5A on UCSC Golden Path with GeneCards custom track

Genomic Location for CA5A Gene

Chromosome:
16
Start:
87,881,546 bp from pter
End:
87,936,569 bp from pter
Size:
55,024 bases
Orientation:
Minus strand

Genomic View for CA5A Gene

Genes around CA5A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CA5A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CA5A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CA5A Gene

Proteins for CA5A Gene

  • Protein details for CA5A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P35218-CAH5A_HUMAN
    Recommended name:
    Carbonic anhydrase 5A, mitochondrial
    Protein Accession:
    P35218
    Secondary Accessions:
    • B2RPF2

    Protein attributes for CA5A Gene

    Size:
    305 amino acids
    Molecular mass:
    34750 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
    Quaternary structure:
    No Data Available

neXtProt entry for CA5A Gene

Selected DME Specific Peptides for CA5A Gene

P35218:
  • FDPSTLLP
  • AELHLVH
  • GSLTTPPL
  • ELHLVHWN
  • QFHFHWG

Post-translational modifications for CA5A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CA5A Gene

Antibody Products

  • R&D Systems Antibodies for CA5A (Carbonic Anhydrase VA/CA5A)
  • R&D Systems Antibodies for CA5A (Carbonic Anhydrase VA/VB (CA5A/5B))
  • Abcam antibodies for CA5A
  • Santa Cruz Biotechnology (SCBT) Antibodies for CA5A

Domains & Families for CA5A Gene

Gene Families for CA5A Gene

Suggested Antigen Peptide Sequences for CA5A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P35218

UniProtKB/Swiss-Prot:

CAH5A_HUMAN :
  • Belongs to the alpha-carbonic anhydrase family.
Family:
  • Belongs to the alpha-carbonic anhydrase family.
genes like me logo Genes that share domains with CA5A: view

Function for CA5A Gene

Molecular function for CA5A Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=10.0 mM for CO(2) {ECO:0000269 PubMed:18618712};
UniProtKB/Swiss-Prot CatalyticActivity:
H(2)CO(3) = CO(2) + H(2)O.
UniProtKB/Swiss-Prot EnzymeRegulation:
Activated by histamine, L-adrenaline, L- and D-histidine, and L- and D-phenylalanine. Inhibited by coumarins, sulfonamide derivatives such as acetazolamide and Foscarnet (phosphonoformate trisodium salt).
UniProtKB/Swiss-Prot Function:
Reversible hydration of carbon dioxide. Low activity.

Enzyme Numbers (IUBMB) for CA5A Gene

Gene Ontology (GO) - Molecular Function for CA5A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004089 carbonate dehydratase activity TAS --
GO:0008270 zinc ion binding IEA --
GO:0016829 lyase activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with CA5A: view
genes like me logo Genes that share phenotypes with CA5A: view

Human Phenotype Ontology for CA5A Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for CA5A Gene

MGI Knock Outs for CA5A:

Animal Model Products

CRISPR Products

miRNA for CA5A Gene

miRTarBase miRNAs that target CA5A

Inhibitory RNA Products

Clone Products

No data available for Transcription Factor Targets and HOMER Transcription for CA5A Gene

Localization for CA5A Gene

Subcellular locations from UniProtKB/Swiss-Prot for CA5A Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CA5A gene
Compartment Confidence
mitochondrion 5
cytosol 3
plasma membrane 1
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for CA5A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion TAS 8356065
GO:0005759 mitochondrial matrix TAS --
genes like me logo Genes that share ontologies with CA5A: view

Pathways & Interactions for CA5A Gene

genes like me logo Genes that share pathways with CA5A: view

Pathways by source for CA5A Gene

2 Reactome pathways for CA5A Gene
1 KEGG pathway for CA5A Gene

Interacting Proteins for CA5A Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 16)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000309649%0d%0a9606.ENSP00000357283%0d%0a9606.ENSP00000451560%0d%0a9606.ENSP00000330633%0d%0a9606.ENSP00000368314%0d%0a9606.ENSP00000341882%0d%0a
Selected Interacting proteins: P35218-CAH5A_HUMAN ENSP00000309649 for CA5A Gene via IID STRING

Gene Ontology (GO) - Biological Process for CA5A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006730 one-carbon metabolic process IEA --
GO:0015701 bicarbonate transport TAS --
genes like me logo Genes that share ontologies with CA5A: view

No data available for SIGNOR curated interactions for CA5A Gene

Drugs & Compounds for CA5A Gene

(15) Drugs for CA5A Gene - From: DrugBank, ApexBio, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Brinzolamide Approved Pharma Target, inhibitor CA II inhibitor 61
Zonisamide Approved, Investigational Pharma Target, inhibitor Antiepileptic with anticonvulsant and mechanistic effect 68
Chlorothiazide Approved, Vet_approved Pharma Inhibition, Inhibitor Carbonic anhydrase inhibitor 7
Dichlorphenamide Approved Pharma 2
Methazolamide Approved Pharma Carbonic anhydrase inhibitor 7

(4) Additional Compounds for CA5A Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Carbonic acid
  • Acid of air
  • Aerial acid
  • Bisodium carbonate
  • Calcined
  • Carbonic acid sodium salt
463-79-6

(7) ApexBio Compounds for CA5A Gene

Compound Action Cas Number
Brinzolamide CA II inhibitor 138890-62-7
Chlorothiazide Carbonic anhydrase inhibitor 58-94-6
Dichlorphenamide 120-97-8
Dorzolamide HCl Carbonic anhydrase inhibitor 130693-82-2
Methazolamide Carbonic anhydrase inhibitor 554-57-4
Topiramate GluR5 receptor antagonist,anticonvulsant 97240-79-4
U-104 CAIX inhibitor 178606-66-1
genes like me logo Genes that share compounds with CA5A: view

Drug Products

Transcripts for CA5A Gene

mRNA/cDNA for CA5A Gene

(5) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CA5A Gene

Carbonic anhydrase VA, mitochondrial:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CA5A Gene

No ASD Table

Relevant External Links for CA5A Gene

GeneLoc Exon Structure for
CA5A
ECgene alternative splicing isoforms for
CA5A

Expression for CA5A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CA5A Gene

mRNA differential expression in normal tissues according to GTEx for CA5A Gene

This gene is overexpressed in Liver (x46.9).

Protein differential expression in normal tissues from HIPED for CA5A Gene

This gene is overexpressed in Gallbladder (35.8), Liver (20.9), and Fetal Liver (11.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CA5A Gene



Protein tissue co-expression partners for CA5A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CA5A Gene:

CA5A

SOURCE GeneReport for Unigene cluster for CA5A Gene:

Hs.177446

Evidence on tissue expression from TISSUES for CA5A Gene

  • Liver(4.4)

Phenotype-based relationships between genes and organs from Gene ORGANizer for CA5A Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • endocrine
  • integumentary
  • nervous
  • respiratory
Organs:
Head and neck:
  • brain
  • ear
  • head
Thorax:
  • diaphragm
  • heart
  • lung
Abdomen:
  • adrenal gland
General:
  • blood
  • peripheral nerve
  • peripheral nervous system
  • skin
  • sweat gland
genes like me logo Genes that share expression patterns with CA5A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CA5A Gene

Orthologs for CA5A Gene

This gene was present in the common ancestor of animals.

Orthologs for CA5A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CA5A 34 35
  • 99.02 (n)
dog
(Canis familiaris)
Mammalia CA5A 34 35
  • 79.69 (n)
cow
(Bos Taurus)
Mammalia CA5A 34 35
  • 78.95 (n)
mouse
(Mus musculus)
Mammalia Car5a 34 16 35
  • 76.81 (n)
rat
(Rattus norvegicus)
Mammalia Car5a 34
  • 75.7 (n)
oppossum
(Monodelphis domestica)
Mammalia CA5A 35
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CA5A 35
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 35
  • 62 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ca5 35
  • 48 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CAH1 36 35
  • 41 (a)
worm
(Caenorhabditis elegans)
Secernentea cah-4 34
  • 48.46 (n)
cah-3 36
  • 37 (a)
Species where no ortholog for CA5A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for CA5A Gene

ENSEMBL:
Gene Tree for CA5A (if available)
TreeFam:
Gene Tree for CA5A (if available)

Paralogs for CA5A Gene

Paralogs for CA5A Gene

(12) SIMAP similar genes for CA5A Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CA5A Gene

genes like me logo Genes that share paralogs with CA5A: view

Variants for CA5A Gene

Sequence variations from dbSNP and Humsavar for CA5A Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs587777316 Pathogenic, Hyperammonemia due to carbonic anhydrase VA deficiency (CA5AD) [MIM:615751] 87,891,876(+) GAGCG(A/G)GCCCG nc-transcript-variant, reference, missense
rs147623570 Pathogenic 87,902,425(+) ATTAC(C/T)TTTAA nc-transcript-variant, reference, synonymous-codon
rs1000043888 -- 87,916,092(+) GAACC(C/T)GGGAG intron-variant
rs1000053339 -- 87,906,867(+) GAATT(A/G)CATCT intron-variant
rs1000066563 -- 87,930,081(+) CTCTC(C/T)TGGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CA5A Gene

Variant ID Type Subtype PubMed ID
dgv36n68 CNV loss 17160897
esv24582 CNV gain 19812545
esv2657678 CNV deletion 23128226
esv2714939 CNV deletion 23290073
esv2758668 CNV loss 17122850
esv2761935 CNV loss 21179565
esv3582433 CNV loss 25503493
esv3639536 CNV loss 21293372
esv3892935 CNV loss 25118596
nsv1059786 CNV gain 25217958
nsv1062946 CNV gain 25217958
nsv1066924 CNV loss 25217958
nsv457616 CNV gain 19166990
nsv573536 CNV gain 21841781
nsv9471 CNV gain 18304495
nsv974841 CNV duplication 23825009
nsv974842 CNV duplication 23825009
nsv978174 CNV duplication 23825009
nsv984362 CNV duplication 23825009

Variation tolerance for CA5A Gene

Residual Variation Intolerance Score: 68.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.61; 31.02% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CA5A Gene

Human Gene Mutation Database (HGMD)
CA5A
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CA5A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CA5A Gene

Disorders for CA5A Gene

MalaCards: The human disease database

(4) MalaCards diseases for CA5A Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
hyperammonemia due to carbonic anhydrase va deficiency
  • carbonic anhydrase va deficiency, hyperammonemia due to
carbonic anhydrase va deficiency
  • hyperammonemia due to carbonic anhydrase va deficiency
herpangina
  • vesicular pharyngitis
pthirus pubis infestation
  • crabs
- elite association - COSMIC cancer census association via MalaCards
Search CA5A in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

CAH5A_HUMAN
  • Hyperammonemia due to carbonic anhydrase VA deficiency (CA5AD) [MIM:615751]: An autosomal recessive inborn error of metabolism, clinically characterized by infantile hyperammonemic encephalopathy. Metabolic abnormalities include hypoglycemia, hyperlactatemia, metabolic acidosis and respiratory alkalosis. {ECO:0000269 PubMed:24530203}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for CA5A

Genetic Association Database (GAD)
CA5A
Human Genome Epidemiology (HuGE) Navigator
CA5A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CA5A
genes like me logo Genes that share disorders with CA5A: view

No data available for Genatlas for CA5A Gene

Publications for CA5A Gene

  1. Genomic organization of the human gene (CA5) and pseudogene for mitochondrial carbonic anhydrase V and their localization to chromosomes 16q and 16p. (PMID: 7490083) Nagao Y. … Sly W.S. (Genomics 1995) 2 3 4 22 64
  2. Human mitochondrial carbonic anhydrase: cDNA cloning, expression, subcellular localization, and mapping to chromosome 16. (PMID: 8356065) Nagao Y. … Sly W.S. (Proc. Natl. Acad. Sci. U.S.A. 1993) 2 3 4 64
  3. Mitochondrial carbonic anhydrase VA deficiency resulting from CA5A alterations presents with hyperammonemia in early childhood. (PMID: 24530203) van Karnebeek C.D. … Stockler-Ipsiroglu S. (Am. J. Hum. Genet. 2014) 3 4 64
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 64
  5. Cell-specific expression of mitochondrial carbonic anhydrase in the human and rat gastrointestinal tract. (PMID: 10082753) Saarnio J. … Sly W.S. (J. Histochem. Cytochem. 1999) 3 22 64

Products for CA5A Gene

Sources for CA5A Gene

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