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Aliases for CA3-AS1 Gene

Subcategory (RNA class) for CA3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CA3-AS1 Gene

  • CA3 Antisense RNA 1 2 3 5

External Ids for CA3-AS1 Gene

Summaries for CA3-AS1 Gene

GeneCards Summary for CA3-AS1 Gene

CA3-AS1 (CA3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CA3-AS1 Gene

Genomics for CA3-AS1 Gene

Regulatory Elements for CA3-AS1 Gene

Enhancers for CA3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G085958 1.3 ENCODE dbSUPER 10.5 -494.6 -494609 2.4 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 FOS JUNB NCOA1 CA3-AS1 CA2 ATP6V0D2 LOC105375622
GH08G086108 1.2 Ensembl ENCODE 9.3 -643.9 -643897 1.2 PKNOX1 FOXA2 ATF1 GATA2 FOS ZHX2 TSHZ1 ZNF579 MEF2D MBD2 SLC7A13 WWP1 LOC105375624 CA2 CA3-AS1 PSKH2 ENSG00000253675
GH08G085999 1.1 ENCODE dbSUPER 9.8 -537.1 -537094 4.9 GTF2F1 PKNOX1 MXI1 JUN MAX CHD7 CEBPG RAD21 RFX5 CTBP1 PSKH2 CA2 CA3-AS1 CA1 ATP6V0D2 RPL36AP31
GH08G085462 0.9 ENCODE 11.6 +1.0 1038 2.2 ARID4B SIN3A ZNF48 YY1 CBX5 ZNF143 SP3 REST KAT8 ZNF579 CA3-AS1 CA2 GC08P085464 GC08P085466
GH08G085437 0.9 Ensembl ENCODE 11.4 +26.8 26781 1.7 PKNOX1 SUZ12 TEAD4 REST RAD21 YY1 GATA3 JUND PRDM6 KDM1A CA2 CA3-AS1 CA1 LRRCC1 GC08P085382
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CA3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CA3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000332064 -185 201 EZH2
ENSR00000226529 915 1601 ARID4B SIN3A ZNF48 YY1 CBX5 ZNF143 SP3 REST KAT8 ZNF579

Genomic Location for CA3-AS1 Gene

Chromosome:
8
Start:
85,441,806 bp from pter
End:
85,464,915 bp from pter
Size:
23,110 bases
Orientation:
Minus strand

Genomic View for CA3-AS1 Gene

Genes around CA3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CA3-AS1 Gene

Proteins for CA3-AS1 Gene

Post-translational modifications for CA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CA3-AS1 Gene

Domains & Families for CA3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CA3-AS1 Gene

Function for CA3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CA3-AS1 Gene

Localization for CA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CA3-AS1 Gene

Pathways & Interactions for CA3-AS1 Gene

SuperPathways for CA3-AS1 Gene

No Data Available

Interacting Proteins for CA3-AS1 Gene

Gene Ontology (GO) - Biological Process for CA3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CA3-AS1 Gene

Drugs & Compounds for CA3-AS1 Gene

No Compound Related Data Available

Transcripts for CA3-AS1 Gene

mRNA/cDNA for CA3-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CA3-AS1 Gene

No ASD Table

Relevant External Links for CA3-AS1 Gene

GeneLoc Exon Structure for
CA3-AS1
ECgene alternative splicing isoforms for
CA3-AS1

Expression for CA3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CA3-AS1 Gene

Orthologs for CA3-AS1 Gene

Evolution for CA3-AS1 Gene

ENSEMBL:
Gene Tree for CA3-AS1 (if available)
TreeFam:
Gene Tree for CA3-AS1 (if available)

No data available for Orthologs for CA3-AS1 Gene

Paralogs for CA3-AS1 Gene

No data available for Paralogs for CA3-AS1 Gene

Variants for CA3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CA3-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs118203931 Pathogenic 85,465,289(+) GGCAT(A/C/G)AGGAC upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs118203934 Pathogenic 85,465,357(+) AAGTA(G/T)GACCC upstream-variant-2KB, reference, stop-gained, utr-variant-5-prime
rs573750741 Pathogenic 85,465,470(+) AGCAG(A/G)TCAGT upstream-variant-2KB, splice-donor-variant
rs371766356 Uncertain significance 85,465,265(+) TCTTT(A/C/T)CCCCA intron-variant, upstream-variant-2KB
rs557422827 Uncertain significance 85,463,944(+) CCCGG(A/G)CCGCC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for CA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CA3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CA3-AS1 Gene

Disorders for CA3-AS1 Gene

Relevant External Links for CA3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CA3-AS1

No disorders were found for CA3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CA3-AS1 Gene

Publications for CA3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for CA3-AS1 Gene

Sources for CA3-AS1 Gene

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