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Aliases for CA3-AS1 Gene

Subcategory (RNA class) for CA3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CA3-AS1 Gene

  • CA3 Antisense RNA 1 2 3 5

External Ids for CA3-AS1 Gene

Summaries for CA3-AS1 Gene

GeneCards Summary for CA3-AS1 Gene

CA3-AS1 (CA3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CA3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CA3-AS1 Gene

Genomics for CA3-AS1 Gene

Regulatory Elements for CA3-AS1 Gene

Enhancers for CA3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H085958 1.3 ENCODE dbSUPER 10.5 -494.6 -494609 2.4 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 FOS ATF7 NCOA1 CA2 CA3-AS1 ATP6V0D2 LOC105375622
GH08H086108 1.2 Ensembl ENCODE 9.3 -643.9 -643897 1.2 PKNOX1 FOXA2 ATF1 INSM2 BMI1 ZNF366 FOS SMARCA5 ZNF362 ELF1 SLC7A13 WWP1 LOC105375624 CA2 CA3-AS1 PSKH2 ENSG00000253675
GH08H085999 1.1 ENCODE dbSUPER 9.8 -537.1 -537094 4.9 GTF2F1 PKNOX1 MXI1 JUN MAX CEBPG RAD21 RFX5 CTBP1 GATA3 PSKH2 CA2 CA3-AS1 CA1 ATP6V0D2 RPL36AP31
GH08H085462 0.9 ENCODE 11.6 +1.0 1038 2.2 ARID4B SIN3A YY1 CBX5 ZNF143 SP3 REST KAT8 MIER3 HNF4A CA3-AS1 GC08P085466 GC08P085464 CA2
GH08H085491 0.6 ENCODE 16.9 -26.8 -26776 0.8 FOSL1 NFIC PKNOX1 ZNF316 NFIB IKZF1 NFE2 EMSY CA3-AS1 CA2 LOC105375937 GC08P085481 GC08P085480
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CA3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CA3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000226529 915 1601 ARID4B SIN3A YY1 CBX5 ZNF143 RUNX3 SP3 REST KAT8 MIER3

Genomic Locations for CA3-AS1 Gene

Genomic Locations for CA3-AS1 Gene
chr8:85,441,806-85,464,915
(GRCh38/hg38)
Size:
23,110 bases
Orientation:
Minus strand
chr8:86,354,080-86,377,144
(GRCh37/hg19)

Genomic View for CA3-AS1 Gene

Genes around CA3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CA3-AS1 Gene

Proteins for CA3-AS1 Gene

Post-translational modifications for CA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CA3-AS1 Gene

Domains & Families for CA3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CA3-AS1 Gene

Function for CA3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CA3-AS1 Gene

Localization for CA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CA3-AS1 Gene

Pathways & Interactions for CA3-AS1 Gene

SuperPathways for CA3-AS1 Gene

No Data Available

Interacting Proteins for CA3-AS1 Gene

Gene Ontology (GO) - Biological Process for CA3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CA3-AS1 Gene

Drugs & Compounds for CA3-AS1 Gene

No Compound Related Data Available

Transcripts for CA3-AS1 Gene

mRNA/cDNA for CA3-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CA3-AS1 Gene

No ASD Table

Relevant External Links for CA3-AS1 Gene

GeneLoc Exon Structure for
CA3-AS1
ECgene alternative splicing isoforms for
CA3-AS1

Expression for CA3-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CA3-AS1 Gene

Orthologs for CA3-AS1 Gene

Evolution for CA3-AS1 Gene

ENSEMBL:
Gene Tree for CA3-AS1 (if available)
TreeFam:
Gene Tree for CA3-AS1 (if available)

No data available for Orthologs for CA3-AS1 Gene

Paralogs for CA3-AS1 Gene

No data available for Paralogs for CA3-AS1 Gene

Variants for CA3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CA3-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs118203931 Pathogenic 85,465,289(+) GGCAT(A/C/G)AGGAC upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs118203934 Pathogenic 85,465,357(+) AAGTA(G/T)GACCC upstream-variant-2KB, reference, stop-gained, utr-variant-5-prime
rs573750741 Pathogenic 85,465,470(+) AGCAG(A/G)TCAGT upstream-variant-2KB, splice-donor-variant
rs371766356 Uncertain significance 85,465,265(+) TCTTT(A/C/T)CCCCA intron-variant, upstream-variant-2KB
rs557422827 Uncertain significance 85,463,944(+) CCCGG(A/G)CCGCC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for CA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CA3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CA3-AS1 Gene

Disorders for CA3-AS1 Gene

Relevant External Links for CA3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CA3-AS1

No disorders were found for CA3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CA3-AS1 Gene

Publications for CA3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60
  3. Downregulation of LncRNA-RP11-317J10.2 promotes cell proliferation and invasion and predicts poor prognosis in colorectal cancer. (PMID: 29073791) Luo J … Huang Y (Scandinavian journal of gastroenterology 2018) 3

Products for CA3-AS1 Gene

Sources for CA3-AS1 Gene

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