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Aliases for CA13 Gene

Aliases for CA13 Gene

  • Carbonic Anhydrase 13 2 3 5
  • Carbonic Anhydrase XIII 2 3 4
  • Carbonate Dehydratase XIII 3 4
  • EC 4.2.1.1 4 61
  • CA-XIII 3 4
  • CAXIII 3

External Ids for CA13 Gene

Previous GeneCards Identifiers for CA13 Gene

  • GC08P086207
  • GC08P086232
  • GC08P086345
  • GC08P081651

Summaries for CA13 Gene

Entrez Gene Summary for CA13 Gene

  • Carbonic anhydrases (CAs) are a family of zinc metalloenzymes. For background information on the CA family, see MIM 114800.[supplied by OMIM, Mar 2008]

GeneCards Summary for CA13 Gene

CA13 (Carbonic Anhydrase 13) is a Protein Coding gene. Among its related pathways are Nitrogen metabolism and Metabolism. GO annotations related to this gene include carbonate dehydratase activity. An important paralog of this gene is CA2.

UniProtKB/Swiss-Prot for CA13 Gene

  • Reversible hydration of carbon dioxide.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CA13 Gene

Genomics for CA13 Gene

Regulatory Elements for CA13 Gene

Enhancers for CA13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G085127 0.9 ENCODE 11.1 -92.4 -92391 1.5 HDAC1 PKNOX1 CBX3 ATF1 CHAMP1 GATA2 CREM CEBPB JUNB POLR2H LRRCC1 CA13 LOC105375933 E2F5
GH08G085147 0.7 ENCODE 12.1 -73.0 -72957 0.2 CTCF TFAP4 ZNF654 TAL1 TRIM22 CHD7 RAD21 TCF12 ARID1B GATA3 E2F5 ENSG00000254208 CA13 LOC105375933
GH08G085265 0.7 ENCODE 11.9 +46.8 46849 4.0 SOX5 SOX13 LEF1 MTA2 HLF CEBPB CEBPG GATA3 CTBP1 HNF1A LRRCC1 CA13 CA1 GC08M085277 LOC105375935
GH08G085153 0.6 Ensembl ENCODE 10.4 -66.7 -66678 0.6 NFYC E2F5 ENSG00000254208 LRRCC1 CA13 LOC105375933
GH08G085459 0.9 FANTOM5 Ensembl ENCODE 6.2 +239.0 239007 0.9 ZBTB33 CA13 CA3 CA2 GC08P085382
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CA13 on UCSC Golden Path with GeneCards custom track

Promoters for CA13 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000226516 213 2400 HDGF ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for CA13 Gene

Chromosome:
8
Start:
85,220,587 bp from pter
End:
85,284,073 bp from pter
Size:
63,487 bases
Orientation:
Plus strand

Genomic View for CA13 Gene

Genes around CA13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CA13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CA13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CA13 Gene

Proteins for CA13 Gene

  • Protein details for CA13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1Q1-CAH13_HUMAN
    Recommended name:
    Carbonic anhydrase 13
    Protein Accession:
    Q8N1Q1

    Protein attributes for CA13 Gene

    Size:
    262 amino acids
    Molecular mass:
    29443 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for CA13 Gene

neXtProt entry for CA13 Gene

Selected DME Specific Peptides for CA13 Gene

Q8N1Q1:
  • RPPQPLK
  • PPLLESVTW
  • TYPGSLT

Post-translational modifications for CA13 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CA13 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for CA13 (Carbonic Anhydrase XIII/CA13)
  • Abcam antibodies for CA13

Protein Products

  • Abcam proteins for CA13

Domains & Families for CA13 Gene

Gene Families for CA13 Gene

Suggested Antigen Peptide Sequences for CA13 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N1Q1

UniProtKB/Swiss-Prot:

CAH13_HUMAN :
  • Belongs to the alpha-carbonic anhydrase family.
Family:
  • Belongs to the alpha-carbonic anhydrase family.
genes like me logo Genes that share domains with CA13: view

Function for CA13 Gene

Molecular function for CA13 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=13.8 mM for CO(2) {ECO:0000269 PubMed:18618712};
UniProtKB/Swiss-Prot CatalyticActivity:
H(2)CO(3) = CO(2) + H(2)O.
UniProtKB/Swiss-Prot EnzymeRegulation:
Inhibited by acetazolamide.
UniProtKB/Swiss-Prot Function:
Reversible hydration of carbon dioxide.

Enzyme Numbers (IUBMB) for CA13 Gene

Gene Ontology (GO) - Molecular Function for CA13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004089 carbonate dehydratase activity TAS --
GO:0008270 zinc ion binding IEA --
GO:0016829 lyase activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with CA13: view
genes like me logo Genes that share phenotypes with CA13: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CA13 Gene

Localization for CA13 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CA13 gene
Compartment Confidence
cytosol 5
nucleus 4
cytoskeleton 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for CA13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS --
GO:0043209 myelin sheath IEA --
GO:0043231 intracellular membrane-bounded organelle IEA --
genes like me logo Genes that share ontologies with CA13: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CA13 Gene

Pathways & Interactions for CA13 Gene

genes like me logo Genes that share pathways with CA13: view

Pathways by source for CA13 Gene

2 Reactome pathways for CA13 Gene
1 KEGG pathway for CA13 Gene

Interacting Proteins for CA13 Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 19)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000318912%0d%0a9606.ENSP00000380602%0d%0a9606.ENSP00000279463%0d%0a9606.ENSP00000344786%0d%0a9606.ENSP00000263665%0d%0a9606.ENSP00000256509%0d%0a
Selected Interacting proteins: ENSP00000318912 Q8N1Q1-CAH13_HUMAN for CA13 Gene via STRING IID

Gene Ontology (GO) - Biological Process for CA13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006730 one-carbon metabolic process IEA --
GO:0015701 bicarbonate transport TAS --
genes like me logo Genes that share ontologies with CA13: view

No data available for SIGNOR curated interactions for CA13 Gene

Drugs & Compounds for CA13 Gene

(5) Drugs for CA13 Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Zonisamide Approved, Investigational Pharma Target, inhibitor Antiepileptic with anticonvulsant and mechanistic effect 68
Carbon dioxide Approved, Vet_approved Pharma 0
Water Approved Pharma 0
Zinc Approved Pharma 2296
N-(4-chlorobenzyl)-N-methylbenzene-1,4-disulfonamide Experimental Pharma Target 0

(1) Additional Compounds for CA13 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Carbonic acid
  • Acid of air
  • Aerial acid
  • Bisodium carbonate
  • Calcined
  • Carbonic acid sodium salt
463-79-6
genes like me logo Genes that share compounds with CA13: view

Transcripts for CA13 Gene

Unigene Clusters for CA13 Gene

Carbonic anhydrase XIII:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CA13 Gene

No ASD Table

Relevant External Links for CA13 Gene

GeneLoc Exon Structure for
CA13
ECgene alternative splicing isoforms for
CA13

Expression for CA13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CA13 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CA13 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (16.2), Platelet (15.7), Salivary gland (10.4), and Skin (7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CA13 Gene



NURSA nuclear receptor signaling pathways regulating expression of CA13 Gene:

CA13

SOURCE GeneReport for Unigene cluster for CA13 Gene:

Hs.127189

mRNA Expression by UniProt/SwissProt for CA13 Gene:

Q8N1Q1-CAH13_HUMAN
Tissue specificity: Expressed in thymus, small intestine, spleen, prostate, ovary, colon and testis.

Evidence on tissue expression from TISSUES for CA13 Gene

  • Pancreas(4.2)
  • Nervous system(2.8)
  • Gall bladder(2.4)
  • Intestine(2.4)
  • Stomach(2.4)
genes like me logo Genes that share expression patterns with CA13: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for CA13 Gene

Orthologs for CA13 Gene

This gene was present in the common ancestor of animals.

Orthologs for CA13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CA13 34 35
  • 99.36 (n)
dog
(Canis familiaris)
Mammalia CA13 34 35
  • 89.69 (n)
cow
(Bos Taurus)
Mammalia CA13 34 35
  • 87.87 (n)
rat
(Rattus norvegicus)
Mammalia Car13 34
  • 87.4 (n)
mouse
(Mus musculus)
Mammalia Car13 34 16 35
  • 87.02 (n)
oppossum
(Monodelphis domestica)
Mammalia CA13 35
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CA13 35
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves LOC100858989 34
  • 72.55 (n)
CA13 35
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CA13 35
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ca13 34
  • 70.07 (n)
zebrafish
(Danio rerio)
Actinopterygii ca2 34 35
  • 63.27 (n)
cahz 35
  • 62 (a)
ManyToMany
-- 34
fruit fly
(Drosophila melanogaster)
Insecta CAH1 35
  • 44 (a)
OneToMany
Species where no ortholog for CA13 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CA13 Gene

ENSEMBL:
Gene Tree for CA13 (if available)
TreeFam:
Gene Tree for CA13 (if available)

Paralogs for CA13 Gene

Paralogs for CA13 Gene

(14) SIMAP similar genes for CA13 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CA13: view

Variants for CA13 Gene

Sequence variations from dbSNP and Humsavar for CA13 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000033976 -- 85,244,770(+) GGTTT(A/G)CTAGG intron-variant, upstream-variant-2KB
rs1000041156 -- 85,257,293(+) GAATT(G/T)GTATC intron-variant, upstream-variant-2KB
rs1000104442 -- 85,259,348(+) TCAGG(G/T)AGATG intron-variant
rs1000141425 -- 85,250,023(+) AAATT(C/G)AAATG intron-variant, nc-transcript-variant
rs1000142024 -- 85,277,598(+) GACAG(G/T)AGGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CA13 Gene

Variant ID Type Subtype PubMed ID
esv2761441 CNV loss 21179565
esv3408198 CNV insertion 20981092
nsv1116573 OTHER inversion 24896259
nsv1125268 CNV insertion 24896259
nsv1129440 OTHER inversion 24896259
nsv483126 CNV gain+loss 15286789
nsv981959 CNV duplication 23825009

Variation tolerance for CA13 Gene

Residual Variation Intolerance Score: 53.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.89; 35.27% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CA13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CA13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CA13 Gene

Disorders for CA13 Gene

Relevant External Links for CA13

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CA13

No disorders were found for CA13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CA13 Gene

Publications for CA13 Gene

  1. Characterization of CA XIII, a novel member of the carbonic anhydrase isozyme family. (PMID: 14600151) Lehtonen J. … Parkkila S. (J. Biol. Chem. 2004) 2 3 4 22 64
  2. Crystal structure of human carbonic anhydrase XIII and its complex with the inhibitor acetazolamide. (PMID: 18618712) Di Fiore A. … De Simone G. (Proteins 2009) 4 22 64
  3. Recent advances in research on the most novel carbonic anhydrases, CA XIII and XV. (PMID: 18336313) Hilvo M. … Parkkila S. (Curr. Pharm. Des. 2008) 3 22 64
  4. Expression of a novel carbonic anhydrase, CA XIII, in normal and neoplastic colorectal mucosa. (PMID: 15836783) Kummola L. … Parkkila S. (BMC Cancer 2005) 3 22 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for CA13 Gene

Sources for CA13 Gene

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