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Aliases for C9orf92 Gene

Aliases for C9orf92 Gene

  • Chromosome 9 Open Reading Frame 92 2 3
  • Putative Uncharacterized Protein C9orf92 3
  • Em:AL513424.1 3

External Ids for C9orf92 Gene

Summaries for C9orf92 Gene

GeneCards Summary for C9orf92 Gene

C9orf92 (Chromosome 9 Open Reading Frame 92) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf92 Gene

Genomics for C9orf92 Gene

Genomic Location for C9orf92 Gene

Start:
16,203,935 bp from pter
End:
16,276,313 bp from pter
Size:
72,379 bases
Orientation:
Minus strand

Genomic View for C9orf92 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C9orf92 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf92 Gene

No data available for Regulatory Elements for C9orf92 Gene

Proteins for C9orf92 Gene

  • Protein details for C9orf92 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGG3-CI092_HUMAN
    Recommended name:
    Putative uncharacterized protein C9orf92
    Protein Accession:
    A6NGG3
    Secondary Accessions:
    • A6NMF8

    Protein attributes for C9orf92 Gene

    Size:
    77 amino acids
    Molecular mass:
    8520 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C9orf92 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C9orf92 Gene

Proteomics data for C9orf92 Gene at MOPED

Post-translational modifications for C9orf92 Gene

No Post-translational modifications

Other Protein References for C9orf92 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C9orf92 Gene

Domains for C9orf92 Gene

Protein Domains for C9orf92 Gene

ProtoNet:
genes like me logo Genes that share domains with C9orf92: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C9orf92 Gene

Function for C9orf92 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C9orf92 Gene

Localization for C9orf92 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf92 Gene COMPARTMENTS Subcellular localization image for C9orf92 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 2

No data available for Gene Ontology (GO) - Cellular Components for C9orf92 Gene

Pathways for C9orf92 Gene

SuperPathways for C9orf92 Gene

No Data Available

Interacting Proteins for C9orf92 Gene

Gene Ontology (GO) - Biological Process for C9orf92 Gene

None

No data available for Pathways by source for C9orf92 Gene

Transcripts for C9orf92 Gene

mRNA/cDNA for C9orf92 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf92 Gene

Chromosome 9 open reading frame 92:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf92 Gene

No ASD Table

Relevant External Links for C9orf92 Gene

GeneLoc Exon Structure for
C9orf92
ECgene alternative splicing isoforms for
C9orf92

Expression for C9orf92 Gene

mRNA expression in normal human tissues for C9orf92 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf92 Gene

This gene is overexpressed in Prostate (7.8).

SOURCE GeneReport for Unigene cluster for C9orf92 Gene Hs.586441

genes like me logo Genes that share expressions with C9orf92: view

Orthologs for C9orf92 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf92 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9orf92 37
  • 97 (a)
OneToOne
LOC465004 36
  • 98.15 (n)
  • 97.22 (a)
Species with no ortholog for C9orf92:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf92 Gene

ENSEMBL:
Gene Tree for C9orf92 (if available)
TreeFam:
Gene Tree for C9orf92 (if available)

Paralogs for C9orf92 Gene

No data available for Paralogs for C9orf92 Gene

Variants for C9orf92 Gene

Sequence variations from dbSNP and Humsavar for C9orf92 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs883557 -- 16,203,742(-) ATAAT(A/G)AGCAG downstream-variant-500B
rs885386 -- 16,252,412(-) AAAGT(A/G)CATGT intron-variant
rs914654 -- 16,208,285(-) TCCAG(A/G)AGGCA intron-variant
rs914655 -- 16,208,133(-) CATGT(A/C)AGGTA intron-variant
rs1010634 -- 16,247,126(+) ttttc(C/T)ctgtg intron-variant

Relevant External Links for C9orf92 Gene

HapMap Linkage Disequilibrium report
C9orf92

No data available for Structural Variations from Database of Genomic Variants (DGV) for C9orf92 Gene

Disorders for C9orf92 Gene

No disorders were found for C9orf92 Gene.

No data available for UniProtKB/Swiss-Prot for C9orf92 Gene

Publications for C9orf92 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4

Products for C9orf92 Gene

Sources for C9orf92 Gene

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