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Aliases for C9orf78 Gene

Aliases for C9orf78 Gene

  • Chromosome 9 Open Reading Frame 78 2 3 5
  • Hepatocellular Carcinoma-Associated Antigen 59 2 3 4
  • HCA59 3 4
  • BA409K20.3 3
  • HSPC220 3

External Ids for C9orf78 Gene

Previous GeneCards Identifiers for C9orf78 Gene

  • GC09M127965
  • GC09M127946
  • GC09M129669
  • GC09M131629
  • GC09M132590
  • GC09M102188

Summaries for C9orf78 Gene

GeneCards Summary for C9orf78 Gene

C9orf78 (Chromosome 9 Open Reading Frame 78) is a Protein Coding gene.

Gene Wiki entry for C9orf78 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf78 Gene

Genomics for C9orf78 Gene

Regulatory Elements for C9orf78 Gene

Enhancers for C9orf78 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C9orf78 on UCSC Golden Path with GeneCards custom track

Promoters for C9orf78 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C9orf78 on UCSC Golden Path with GeneCards custom track

Genomic Location for C9orf78 Gene

Chromosome:
9
Start:
129,827,285 bp from pter
End:
129,835,863 bp from pter
Size:
8,579 bases
Orientation:
Minus strand

Genomic View for C9orf78 Gene

Genes around C9orf78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf78 Gene

Proteins for C9orf78 Gene

  • Protein details for C9orf78 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NZ63-CI078_HUMAN
    Recommended name:
    Uncharacterized protein C9orf78
    Protein Accession:
    Q9NZ63
    Secondary Accessions:
    • B3KPX8
    • Q8WVU6
    • Q9NT39

    Protein attributes for C9orf78 Gene

    Size:
    289 amino acids
    Molecular mass:
    33688 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C9orf78 Gene

Proteomics data for C9orf78 Gene at MOPED

Post-translational modifications for C9orf78 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C9orf78 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C9orf78 Gene

Domains & Families for C9orf78 Gene

Protein Domains for C9orf78 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C9orf78 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf78: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C9orf78 Gene

Function for C9orf78 Gene

Phenotypes for C9orf78 Gene

genes like me logo Genes that share phenotypes with C9orf78: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C9orf78 Gene

Localization for C9orf78 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf78 Gene COMPARTMENTS Subcellular localization image for C9orf78 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for C9orf78 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with C9orf78: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C9orf78 Gene

Pathways & Interactions for C9orf78 Gene

SuperPathways for C9orf78 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C9orf78 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf78 Gene

Drugs & Compounds for C9orf78 Gene

No Compound Related Data Available

Transcripts for C9orf78 Gene

Unigene Clusters for C9orf78 Gene

Chromosome 9 open reading frame 78:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf78 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b ^ 9a · 9b · 9c
SP1: -
SP2: - - - - -
SP3: - -
SP4: -
SP5:

Relevant External Links for C9orf78 Gene

GeneLoc Exon Structure for
C9orf78
ECgene alternative splicing isoforms for
C9orf78

Expression for C9orf78 Gene

mRNA expression in normal human tissues for C9orf78 Gene

Protein differential expression in normal tissues from HIPED for C9orf78 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (32.3) and CD8 Tcells (10.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for C9orf78 Gene



SOURCE GeneReport for Unigene cluster for C9orf78 Gene Hs.278429

genes like me logo Genes that share expression patterns with C9orf78: view

Protein tissue co-expression partners for C9orf78 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C9orf78 Gene

Orthologs for C9orf78 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for C9orf78 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia C11H9orf78 35
  • 90.82 (n)
  • 98.49 (a)
C11H9ORF78 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C9H9orf78 35
  • 92.96 (n)
  • 97.92 (a)
-- 36
  • 96 (a)
OneToMany
-- 36
  • 98 (a)
OneToMany
mouse
(Mus musculus)
Mammalia BC005624 35
  • 87.31 (n)
  • 95.85 (a)
BC005624 16
BC005624 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf78 35
  • 99.65 (n)
  • 100 (a)
C9orf78 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C9orf78 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C9orf78 36
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves C17H9ORF78 35
  • 79.47 (n)
  • 88.24 (a)
C9orf78 36
  • 86 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c9orf78 35
  • 74.42 (n)
  • 82.29 (a)
zebrafish
(Danio rerio)
Actinopterygii zgc:103692 35
  • 71.24 (n)
  • 78.52 (a)
C5H9orf78 36
  • 77 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006620 35
  • 58.88 (n)
  • 55.74 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG7974 35
  • 59.57 (n)
  • 55.02 (a)
CG7974 36
  • 48 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea T23G11.4 36
  • 29 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G02330 35
  • 43.16 (n)
  • 37.18 (a)
rice
(Oryza sativa)
Liliopsida Os03g0374100 35
  • 44.73 (n)
  • 33.76 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8931 36
  • 52 (a)
OneToOne
Species with no ortholog for C9orf78:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C9orf78 Gene

ENSEMBL:
Gene Tree for C9orf78 (if available)
TreeFam:
Gene Tree for C9orf78 (if available)

Paralogs for C9orf78 Gene

Pseudogenes.org Pseudogenes for C9orf78 Gene

genes like me logo Genes that share paralogs with C9orf78: view

No data available for Paralogs for C9orf78 Gene

Variants for C9orf78 Gene

Sequence variations from dbSNP and Humsavar for C9orf78 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
VAR_050828 -
rs732074 -- 129,828,152(+) CCACT(C/G)TGCAC utr-variant-3-prime
rs1130235 -- 129,827,804(-) TCAAA(A/G)AAAAA utr-variant-3-prime
rs1806988 -- 129,828,073(+) CAGGC(A/G)GGAGC utr-variant-3-prime
rs1806989 -- 129,828,074(+) aggcg(G/T)gagcc utr-variant-3-prime

Variation tolerance for C9orf78 Gene

Residual Variation Intolerance Score: 20.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.49; 10.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C9orf78 Gene

HapMap Linkage Disequilibrium report
C9orf78

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C9orf78 Gene

Disorders for C9orf78 Gene

Relevant External Links for C9orf78

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C9orf78

No disorders were found for C9orf78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf78 Gene

Publications for C9orf78 Gene

  1. Large scale identification of human hepatocellular carcinoma- associated antigens by autoantibodies. (PMID: 12097419) Wang Y. … Chen W.-F. (J. Immunol. 2002) 2 3 4 67
  2. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3
  3. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. (PMID: 25281560) Lambert J.P. … Gingras A.C. (J Proteomics 2015) 3
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3

Products for C9orf78 Gene

Sources for C9orf78 Gene

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