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Aliases for C9orf62 Gene

Aliases for C9orf62 Gene

  • Chromosome 9 Open Reading Frame 62 2 3

External Ids for C9orf62 Gene

Previous GeneCards Identifiers for C9orf62 Gene

  • GC09P133674
  • GC09P135461
  • GC09U900682
  • GC09P137374
  • GC09P138235
  • GC09P107692

Summaries for C9orf62 Gene

GeneCards Summary for C9orf62 Gene

C9orf62 (Chromosome 9 Open Reading Frame 62) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf62 Gene

Genomics for C9orf62 Gene

Regulatory Elements for C9orf62 Gene

Genomic Location for C9orf62 Gene

Start:
135,343,249 bp from pter
End:
135,346,562 bp from pter
Size:
3,314 bases
Orientation:
Plus strand

Genomic View for C9orf62 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C9orf62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf62 Gene

Proteins for C9orf62 Gene

  • Protein details for C9orf62 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4C0-CI062_HUMAN
    Recommended name:
    Putative uncharacterized protein C9orf62
    Protein Accession:
    Q8N4C0
    Secondary Accessions:
    • Q5T7E2

    Protein attributes for C9orf62 Gene

    Size:
    152 amino acids
    Molecular mass:
    16682 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C9orf62 Gene

Proteomics data for C9orf62 Gene at MOPED

Post-translational modifications for C9orf62 Gene

No Post-translational modifications

Other Protein References for C9orf62 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C9orf62 Gene

Domains for C9orf62 Gene

Protein Domains for C9orf62 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf62: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf62 Gene

Function for C9orf62 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf62

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C9orf62 Gene

Localization for C9orf62 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf62 Gene COMPARTMENTS Subcellular localization image for C9orf62 gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C9orf62 Gene

Pathways for C9orf62 Gene

SuperPathways for C9orf62 Gene

No Data Available

Interacting Proteins for C9orf62 Gene

Gene Ontology (GO) - Biological Process for C9orf62 Gene

None

No data available for Pathways by source for C9orf62 Gene

Transcripts for C9orf62 Gene

mRNA/cDNA for C9orf62 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf62 Gene

Chromosome 9 open reading frame 62:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf62

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf62 Gene

No ASD Table

Relevant External Links for C9orf62 Gene

GeneLoc Exon Structure for
C9orf62
ECgene alternative splicing isoforms for
C9orf62

Expression for C9orf62 Gene

mRNA expression in normal human tissues for C9orf62 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf62 Gene

This gene is overexpressed in Brain - Cortex (12.8), Brain - Frontal Cortex (BA9) (10.5), Brain - Hippocampus (6.5), and Brain - Anterior cingulate cortex (BA24) (5.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C9orf62 Gene

SOURCE GeneReport for Unigene cluster for C9orf62 Gene Hs.559511

genes like me logo Genes that share expressions with C9orf62: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C9orf62 Gene

Orthologs for C9orf62 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf62 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf62 35
  • 98.23 (n)
  • 96.03 (a)
C9orf62 36
  • 96 (a)
OneToOne
Species with no ortholog for C9orf62:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf62 Gene

ENSEMBL:
Gene Tree for C9orf62 (if available)
TreeFam:
Gene Tree for C9orf62 (if available)

Paralogs for C9orf62 Gene

No data available for Paralogs for C9orf62 Gene

Variants for C9orf62 Gene

Sequence variations from dbSNP and Humsavar for C9orf62 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs16800 -- 135,341,662(-) CACCC(A/G)CTGTG upstream-variant-2KB
rs914397 -- 135,344,366(-) ACCCC(A/C/T)TTGGG missense, reference
rs914398 -- 135,344,185(-) AGGAC(C/T)GGGCG reference, synonymous-codon
rs1411991 -- 135,345,668(+) GCATA(C/T)GTATG utr-variant-3-prime
rs4240714 -- 135,342,972(+) TCCTC(C/T)GGGGT upstream-variant-2KB

Relevant External Links for C9orf62 Gene

HapMap Linkage Disequilibrium report
C9orf62

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C9orf62 Gene

Disorders for C9orf62 Gene

Relevant External Links for C9orf62

Genetic Association Database (GAD)
C9orf62
genes like me logo Genes that share disorders with C9orf62: view

No data available for UniProtKB/Swiss-Prot for C9orf62 Gene

Publications for C9orf62 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Genome-wide association study of the child behavior checklist dysregulation profile. (PMID: 21784300) Mick E. … Faraone S.V. (J Am Acad Child Adolesc Psychiatry 2011) 48
  3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C9orf62 Gene

Sources for C9orf62 Gene

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