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Aliases for C9orf41-AS1 Gene

Subcategory (RNA class) for C9orf41-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C9orf41-AS1 Gene

  • C9orf41 Antisense RNA 1 2 3 5

External Ids for C9orf41-AS1 Gene

Summaries for C9orf41-AS1 Gene

GeneCards Summary for C9orf41-AS1 Gene

C9orf41-AS1 (C9orf41 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf41-AS1 Gene

Genomics for C9orf41-AS1 Gene

Regulatory Elements for C9orf41-AS1 Gene

Enhancers for C9orf41-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G074951 1.1 ENCODE 13.9 -0.1 -123 3.3 MLX CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 NMRK1 OSTF1 C9orf41-AS1 CARNMT1 TRPM6 RNU6-445P C9orf40 LOC100133316
GH09G074250 0.7 dbSUPER 5.1 -700.8 -700763 3.5 ZSCAN4 BHLHE40 SIN3A ZFHX2 JUND ZNF366 SMARCA4 FOS MAFK EGR2 RORB C9orf41-AS1 LOC101927329 PIR60276
GH09G074263 0.4 dbSUPER 5.1 -688.7 -688685 1.3 FOXA1 RORB C9orf41-AS1 LOC101927329 PIR60276
GH09G074235 0.4 dbSUPER 5.1 -716.3 -716283 1.5 MAFK C9orf41-AS1 PIR60276 LOC101927329
GH09G074239 0.2 dbSUPER 5.1 -712.3 -712270 2.0 RORB C9orf41-AS1 PIR60276 LOC101927329
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C9orf41-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for C9orf41-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000236040 -465 2601 MLX CREB3L1 AGO1 SIN3A DMAP1 ZNF2 ZNF766 ZNF143 MXD4 NFYC

Genomic Location for C9orf41-AS1 Gene

Chromosome:
9
Start:
74,952,965 bp from pter
End:
74,997,382 bp from pter
Size:
44,418 bases
Orientation:
Plus strand

Genomic View for C9orf41-AS1 Gene

Genes around C9orf41-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf41-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf41-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf41-AS1 Gene

Proteins for C9orf41-AS1 Gene

Post-translational modifications for C9orf41-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C9orf41-AS1 Gene

Domains & Families for C9orf41-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf41-AS1 Gene

Function for C9orf41-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf41-AS1 Gene

Localization for C9orf41-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C9orf41-AS1 Gene

Pathways & Interactions for C9orf41-AS1 Gene

SuperPathways for C9orf41-AS1 Gene

No Data Available

Interacting Proteins for C9orf41-AS1 Gene

Gene Ontology (GO) - Biological Process for C9orf41-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf41-AS1 Gene

Drugs & Compounds for C9orf41-AS1 Gene

No Compound Related Data Available

Transcripts for C9orf41-AS1 Gene

mRNA/cDNA for C9orf41-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf41-AS1 Gene

No ASD Table

Relevant External Links for C9orf41-AS1 Gene

GeneLoc Exon Structure for
C9orf41-AS1
ECgene alternative splicing isoforms for
C9orf41-AS1

Expression for C9orf41-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C9orf41-AS1 Gene

genes like me logo Genes that share expression patterns with C9orf41-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C9orf41-AS1 Gene

Orthologs for C9orf41-AS1 Gene

Evolution for C9orf41-AS1 Gene

ENSEMBL:
Gene Tree for C9orf41-AS1 (if available)
TreeFam:
Gene Tree for C9orf41-AS1 (if available)

No data available for Orthologs for C9orf41-AS1 Gene

Paralogs for C9orf41-AS1 Gene

No data available for Paralogs for C9orf41-AS1 Gene

Variants for C9orf41-AS1 Gene

Sequence variations from dbSNP and Humsavar for C9orf41-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000047801 -- 74,952,848(+) CCGGA(C/G)GTTGA upstream-variant-2KB, utr-variant-5-prime
rs1000099920 -- 74,952,683(+) AAGAG(A/C)GAGGA upstream-variant-2KB, utr-variant-5-prime
rs1000239867 -- 74,971,995(+) GGTCT(C/T)GCTAT intron-variant
rs1000264492 -- 74,978,416(+) AACTG(A/G)GGGAT intron-variant
rs1000296806 -- 74,978,284(+) CAAGC(A/G)TAAAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C9orf41-AS1 Gene

Variant ID Type Subtype PubMed ID
esv988386 CNV insertion 20482838
nsv507518 OTHER sequence alteration 20534489
nsv509303 CNV insertion 20534489
nsv982307 CNV duplication 23825009

Relevant External Links for C9orf41-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf41-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C9orf41-AS1 Gene

Disorders for C9orf41-AS1 Gene

Relevant External Links for C9orf41-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C9orf41-AS1

No disorders were found for C9orf41-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf41-AS1 Gene

Publications for C9orf41-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C9orf41-AS1 Gene

Sources for C9orf41-AS1 Gene

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