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Aliases for C9orf41 Gene

Aliases for C9orf41 Gene

  • Chromosome 9 Open Reading Frame 41 2 3

External Ids for C9orf41 Gene

Summaries for C9orf41 Gene

GeneCards Summary for C9orf41 Gene

C9orf41 (Chromosome 9 Open Reading Frame 41) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf41 Gene

Genomics for C9orf41 Gene

Genomic Location for C9orf41 Gene

Start:
74,981,020 bp from pter
End:
75,028,423 bp from pter
Size:
47,404 bases
Orientation:
Minus strand

Genomic View for C9orf41 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C9orf41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf41 Gene

Regulatory Elements for C9orf41 Gene

Proteins for C9orf41 Gene

  • Protein details for C9orf41 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4J0-CI041_HUMAN
    Recommended name:
    UPF0586 protein C9orf41
    Protein Accession:
    Q8N4J0
    Secondary Accessions:
    • Q7Z383
    • Q8N7C5

    Protein attributes for C9orf41 Gene

    Size:
    409 amino acids
    Molecular mass:
    47186 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC05369.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for C9orf41 Gene

Proteomics data for C9orf41 Gene at MOPED

Post-translational modifications for C9orf41 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys100

Other Protein References for C9orf41 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C9orf41 Gene

Domains for C9orf41 Gene

Protein Domains for C9orf41 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

CI041_HUMAN
Family:
  • Belongs to the UPF0586 family.:
    • Q8N4J0
genes like me logo Genes that share domains with C9orf41: view

No data available for Gene Families for C9orf41 Gene

Function for C9orf41 Gene

miRNA for C9orf41 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C9orf41 Gene

Localization for C9orf41 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf41 Gene COMPARTMENTS Subcellular localization image for C9orf41 gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 2
cytoskeleton 1
golgi apparatus 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for C9orf41 Gene

Pathways for C9orf41 Gene

SuperPathways for C9orf41 Gene

No Data Available

Interacting Proteins for C9orf41 Gene

Gene Ontology (GO) - Biological Process for C9orf41 Gene

None

No data available for Pathways by source for C9orf41 Gene

Transcripts for C9orf41 Gene

Unigene Clusters for C9orf41 Gene

Chromosome 9 open reading frame 41:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf41 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
SP1: - - - -
SP2: -
SP3:
SP4:

Relevant External Links for C9orf41 Gene

GeneLoc Exon Structure for
C9orf41
ECgene alternative splicing isoforms for
C9orf41

Expression for C9orf41 Gene

mRNA expression in normal human tissues for C9orf41 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C9orf41 Gene

SOURCE GeneReport for Unigene cluster for C9orf41 Gene Hs.567688

genes like me logo Genes that share expressions with C9orf41: view

Orthologs for C9orf41 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for C9orf41 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf41 36
  • 99.92 (n)
  • 100 (a)
C9orf41 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C8H9orf41 36
  • 94.46 (n)
  • 95.84 (a)
C9orf41 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C1H9orf41 36
  • 95.49 (n)
  • 96.87 (a)
C9orf41 37
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2410127L17Rik 36
  • 92.21 (n)
  • 93.96 (a)
2410127L17Rik 16
2410127L17Rik 37
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C9orf41 37
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C9orf41 37
  • 76 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1311863 36
  • 92.48 (n)
  • 93.96 (a)
chicken
(Gallus gallus)
Aves CZH9ORF41 36
  • 84.35 (n)
  • 91.59 (a)
CZH9ORF41 37
  • 75 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C9orf41 37
  • 74 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.5307 36
tropical clawed frog
(Silurana tropicalis)
Amphibia c9orf41 36
  • 75.48 (n)
  • 80.23 (a)
Str.7522 36
zebrafish
(Danio rerio)
Actinopterygii C5H9orf41 37
  • 68 (a)
OneToOne
zgc:112985 36
  • 67.75 (n)
  • 72.46 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007115 36
  • 52.63 (n)
  • 45.61 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG11596 36
  • 49.81 (n)
  • 45.64 (a)
CG11596 37
  • 36 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y48E1C.2 36
  • 49.8 (n)
  • 43.71 (a)
Y48E1C.2 37
  • 40 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ACL085C 36
  • 43.66 (n)
  • 35.16 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 37
  • 28 (a)
OneToOne
-- 39
YNL092W 36
  • 46.12 (n)
  • 36.92 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C13750g 36
  • 47.26 (n)
  • 34.15 (a)
soybean
(Glycine max)
eudicotyledons Gma.12593 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G32170 36
  • 54.55 (n)
  • 49.8 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.3236 36
rice
(Oryza sativa)
Liliopsida Os.17049 36
Os05g0511300 36
  • 56.13 (n)
  • 50.2 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.11407 36
bread mold
(Neurospora crassa)
Ascomycetes NCU03692 36
  • 46.05 (n)
  • 39.47 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC1778.07 36
  • 49.1 (n)
  • 42.22 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 46 (a)
OneToOne
Species with no ortholog for C9orf41:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for C9orf41 Gene

ENSEMBL:
Gene Tree for C9orf41 (if available)
TreeFam:
Gene Tree for C9orf41 (if available)

Paralogs for C9orf41 Gene

No data available for Paralogs for C9orf41 Gene

Variants for C9orf41 Gene

Sequence variations from dbSNP and Humsavar for C9orf41 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs719506 -- 75,028,701(-) TTTCC(C/T)TTCTT upstream-variant-2KB
rs719507 -- 75,028,603(-) GTAAC(C/G/T)GCAGT upstream-variant-2KB
rs724547 -- 75,026,044(-) CTAGG(G/T)GTACA intron-variant
rs773160 -- 75,030,148(+) GTTGC(C/G)CAGGT upstream-variant-2KB
rs1410183 -- 75,000,078(-) GAGGG(C/G)TAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C9orf41 Gene

Variant ID Type Subtype PubMed ID
nsv893467 CNV Gain 21882294

Relevant External Links for C9orf41 Gene

HapMap Linkage Disequilibrium report
C9orf41

Disorders for C9orf41 Gene

No disorders were found for C9orf41 Gene.

No data available for UniProtKB/Swiss-Prot for C9orf41 Gene

Publications for C9orf41 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for C9orf41 Gene

Sources for C9orf41 Gene

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