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Aliases for C9orf40 Gene

Aliases for C9orf40 Gene

  • Chromosome 9 Open Reading Frame 40 2 3

External Ids for C9orf40 Gene

Previous GeneCards Identifiers for C9orf40 Gene

  • GC09M073018
  • GC09M074791
  • GC09M076751
  • GC09M077561
  • GC09M047383

Summaries for C9orf40 Gene

GeneCards Summary for C9orf40 Gene

C9orf40 (Chromosome 9 Open Reading Frame 40) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf40 Gene

Genomics for C9orf40 Gene

Regulatory Elements for C9orf40 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C9orf40 Gene

Start:
74,946,581 bp from pter
End:
74,952,886 bp from pter
Size:
6,306 bases
Orientation:
Minus strand

Genomic View for C9orf40 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C9orf40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf40 Gene

Proteins for C9orf40 Gene

  • Protein details for C9orf40 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IXQ3-CI040_HUMAN
    Recommended name:
    Uncharacterized protein C9orf40
    Protein Accession:
    Q8IXQ3
    Secondary Accessions:
    • Q9NWD3

    Protein attributes for C9orf40 Gene

    Size:
    194 amino acids
    Molecular mass:
    21063 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C9orf40 Gene

Proteomics data for C9orf40 Gene at MOPED

Post-translational modifications for C9orf40 Gene

  • Ubiquitination at Lys17
  • Modification sites at PhosphoSitePlus

Other Protein References for C9orf40 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C9orf40 Gene

Domains for C9orf40 Gene

Protein Domains for C9orf40 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf40: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf40 Gene

Function for C9orf40 Gene

Animal Model Products

CRISPR Products

miRNA for C9orf40 Gene

miRTarBase miRNAs that target C9orf40

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf40

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C9orf40 Gene

Localization for C9orf40 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf40 Gene COMPARTMENTS Subcellular localization image for C9orf40 gene
Compartment Confidence
mitochondrion 3
nucleus 2
peroxisome 2
cytoskeleton 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C9orf40 Gene

Pathways for C9orf40 Gene

SuperPathways for C9orf40 Gene

No Data Available

Interacting Proteins for C9orf40 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000366050%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000366050 for C9orf40 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for C9orf40 Gene

None

No data available for Pathways by source for C9orf40 Gene

Transcripts for C9orf40 Gene

mRNA/cDNA for C9orf40 Gene

(84) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf40 Gene

Chromosome 9 open reading frame 40:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf40

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf40 Gene

No ASD Table

Relevant External Links for C9orf40 Gene

GeneLoc Exon Structure for
C9orf40
ECgene alternative splicing isoforms for
C9orf40

Expression for C9orf40 Gene

mRNA expression in normal human tissues for C9orf40 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C9orf40 Gene

SOURCE GeneReport for Unigene cluster for C9orf40 Gene Hs.532296

genes like me logo Genes that share expressions with C9orf40: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C9orf40 Gene

Orthologs for C9orf40 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C9orf40 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf40 35
  • 97.59 (n)
  • 96.91 (a)
C9orf40 36
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C8H9orf40 35
  • 85.4 (n)
  • 74.23 (a)
C9orf40 36
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C1H9orf40 35
  • 82.82 (n)
  • 72.16 (a)
C9orf40 36
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia D030056L22Rik 35
  • 71.4 (n)
  • 58.78 (a)
D030056L22Rik 16
D030056L22Rik 36
  • 59 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C9orf40 36
  • 51 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C9orf40 36
  • 37 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC499331 35
  • 72.63 (n)
  • 60.49 (a)
Species with no ortholog for C9orf40:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf40 Gene

ENSEMBL:
Gene Tree for C9orf40 (if available)
TreeFam:
Gene Tree for C9orf40 (if available)

Paralogs for C9orf40 Gene

No data available for Paralogs for C9orf40 Gene

Variants for C9orf40 Gene

Sequence variations from dbSNP and Humsavar for C9orf40 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1045036 -- 74,947,361(-) AAAAT(C/T)TATTG utr-variant-3-prime
rs2769058 -- 74,948,171(+) CAGTA(C/T)TGGAA synonymous-codon, reference
rs2769059 -- 74,950,701(+) AAAGG(C/T)ATTTG intron-variant
rs7860570 -- 74,949,911(+) aatcc(C/T)agcta intron-variant
rs11144166 -- 74,946,220(+) TAAAC(A/C)ACTTT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C9orf40 Gene

Variant ID Type Subtype PubMed ID
nsv518305 CNV Loss 19592680
nsv507518 CNV Insertion 20534489

Relevant External Links for C9orf40 Gene

HapMap Linkage Disequilibrium report
C9orf40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C9orf40 Gene

Disorders for C9orf40 Gene

No disorders were found for C9orf40 Gene.

No data available for UniProtKB/Swiss-Prot for C9orf40 Gene

Publications for C9orf40 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3
  5. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3

Products for C9orf40 Gene

Sources for C9orf40 Gene

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