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Aliases for C9orf173 Gene

Aliases for C9orf173 Gene

  • Chromosome 9 Open Reading Frame 173 2 3

External Ids for C9orf173 Gene

Summaries for C9orf173 Gene

GeneCards Summary for C9orf173 Gene

C9orf173 (Chromosome 9 Open Reading Frame 173) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf173 Gene

Genomics for C9orf173 Gene

Genomic Location for C9orf173 Gene

Start:
137,250,862 bp from pter
End:
137,253,686 bp from pter
Size:
2,825 bases
Orientation:
Plus strand

Genomic View for C9orf173 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C9orf173 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf173 Gene

No data available for Regulatory Elements for C9orf173 Gene

Proteins for C9orf173 Gene

  • Protein details for C9orf173 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7X2-CI173_HUMAN
    Recommended name:
    Uncharacterized protein C9orf173
    Protein Accession:
    Q8N7X2
    Secondary Accessions:
    • A2RU24
    • B7ZM72
    • B7ZM76
    • Q8NEA3

    Protein attributes for C9orf173 Gene

    Size:
    389 amino acids
    Molecular mass:
    42877 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C9orf173 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C9orf173 Gene

Proteomics data for C9orf173 Gene at MOPED

Post-translational modifications for C9orf173 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C9orf173 Gene

Domains for C9orf173 Gene

Protein Domains for C9orf173 Gene

ProtoNet:
genes like me logo Genes that share domains with C9orf173: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C9orf173 Gene

Function for C9orf173 Gene

Phenotypes for C9orf173 Gene

GenomeRNAi human phenotypes for C9orf173:
genes like me logo Genes that share phenotypes with C9orf173: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C9orf173 Gene

Localization for C9orf173 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf173 Gene COMPARTMENTS Subcellular localization image for C9orf173 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for C9orf173 Gene

Pathways for C9orf173 Gene

SuperPathways for C9orf173 Gene

No Data Available

Interacting Proteins for C9orf173 Gene

Gene Ontology (GO) - Biological Process for C9orf173 Gene

None

No data available for Pathways by source for C9orf173 Gene

Transcripts for C9orf173 Gene

mRNA/cDNA for C9orf173 Gene

(6) REFSEQ mRNAs :
(10) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf173 Gene

Chromosome 9 open reading frame 173:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf173 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1: - -
SP2: -
SP3: - - -
SP4:

Relevant External Links for C9orf173 Gene

GeneLoc Exon Structure for
C9orf173
ECgene alternative splicing isoforms for
C9orf173

Expression for C9orf173 Gene

mRNA expression in normal human tissues for C9orf173 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf173 Gene

This gene is overexpressed in Testis (30.1).

SOURCE GeneReport for Unigene cluster for C9orf173 Gene Hs.372640

genes like me logo Genes that share expressions with C9orf173: view

Orthologs for C9orf173 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C9orf173 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf173 36
  • 99.03 (n)
  • 98.38 (a)
C9orf173 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C9orf173 37
  • 59 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4933433C11Rik 36
  • 74.75 (n)
  • 67.11 (a)
4933433C11Rik 16
4933433C11Rik 37
  • 55 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C9orf173 37
  • 40 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC499746 36
  • 73.93 (n)
  • 67 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 18 (a)
OneToOne
Species with no ortholog for C9orf173:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf173 Gene

ENSEMBL:
Gene Tree for C9orf173 (if available)
TreeFam:
Gene Tree for C9orf173 (if available)

Paralogs for C9orf173 Gene

Selected SIMAP similar genes for C9orf173 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with C9orf173: view

No data available for Paralogs for C9orf173 Gene

Variants for C9orf173 Gene

Sequence variations from dbSNP and Humsavar for C9orf173 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
VAR_039898 -

Structural Variations from Database of Genomic Variants (DGV) for C9orf173 Gene

Variant ID Type Subtype PubMed ID
nsv894387 CNV Gain 21882294
esv2422220 CNV Deletion 17116639
dgv8412n71 CNV Loss 21882294
dgv8416n71 CNV Loss 21882294
nsv524322 CNV Loss 19592680
dgv8423n71 CNV Loss 21882294
nsv894502 CNV Loss 21882294
nsv894521 CNV Loss 21882294
dgv8442n71 CNV Loss 21882294
dgv8445n71 CNV Loss 21882294
dgv8446n71 CNV Loss 21882294
dgv8450n71 CNV Loss 21882294
nsv894603 CNV Gain+Loss 21882294
dgv8452n71 CNV Gain+Loss 21882294
dgv8453n71 CNV Gain 21882294
dgv8454n71 CNV Gain 21882294
dgv8455n71 CNV Gain+Loss 21882294
nsv894631 CNV Loss 21882294
dgv8457n71 CNV Gain 21882294
nsv894637 CNV Loss 21882294
nsv894642 CNV Loss 21882294

Relevant External Links for C9orf173 Gene

HapMap Linkage Disequilibrium report
C9orf173

Disorders for C9orf173 Gene

No disorders were found for C9orf173 Gene.

No data available for UniProtKB/Swiss-Prot for C9orf173 Gene

Publications for C9orf173 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C9orf173 Gene

Sources for C9orf173 Gene

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