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Aliases for C9orf163 Gene

Aliases for C9orf163 Gene

  • Chromosome 9 Open Reading Frame 163 2 3

External Ids for C9orf163 Gene

Previous GeneCards Identifiers for C9orf163 Gene

  • GC09P138497
  • GC09P139377
  • GC09P108837

Summaries for C9orf163 Gene

GeneCards Summary for C9orf163 Gene

C9orf163 (Chromosome 9 Open Reading Frame 163) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf163 Gene

Genomics for C9orf163 Gene

Regulatory Elements for C9orf163 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C9orf163 Gene

Start:
136,483,495 bp from pter
End:
136,486,067 bp from pter
Size:
2,573 bases
Orientation:
Plus strand

Genomic View for C9orf163 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C9orf163 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf163 Gene

Proteins for C9orf163 Gene

  • Protein details for C9orf163 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9P6-CI163_HUMAN
    Recommended name:
    Uncharacterized protein C9orf163
    Protein Accession:
    Q8N9P6
    Secondary Accessions:

    Protein attributes for C9orf163 Gene

    Size:
    203 amino acids
    Molecular mass:
    22154 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C9orf163 Gene

Proteomics data for C9orf163 Gene at MOPED

Post-translational modifications for C9orf163 Gene

No Post-translational modifications

Other Protein References for C9orf163 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C9orf163 Gene

Domains for C9orf163 Gene

Protein Domains for C9orf163 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf163: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf163 Gene

Function for C9orf163 Gene

Animal Model Products

CRISPR Products

miRNA for C9orf163 Gene

miRTarBase miRNAs that target C9orf163

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf163

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C9orf163 Gene

Localization for C9orf163 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf163 Gene COMPARTMENTS Subcellular localization image for C9orf163 gene
Compartment Confidence
extracellular 2
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C9orf163 Gene

Pathways for C9orf163 Gene

SuperPathways for C9orf163 Gene

No Data Available

Interacting Proteins for C9orf163 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000346345%0d%0a9606.ENSP00000373600%0d%0a9606.ENSP00000265333%0d%0a
Selected Interacting proteins: ENSP00000346345 Q8N9P6-CI163_HUMAN for C9orf163 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for C9orf163 Gene

None

No data available for Pathways by source for C9orf163 Gene

Transcripts for C9orf163 Gene

mRNA/cDNA for C9orf163 Gene

(6) Selected AceView cDNA sequences:
(5) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf163 Gene

Chromosome 9 open reading frame 163:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf163

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf163 Gene

No ASD Table

Relevant External Links for C9orf163 Gene

GeneLoc Exon Structure for
C9orf163
ECgene alternative splicing isoforms for
C9orf163

Expression for C9orf163 Gene

mRNA expression in normal human tissues for C9orf163 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf163 Gene

This gene is overexpressed in Testis (6.0) and Pituitary (5.4).

SOURCE GeneReport for Unigene cluster for C9orf163 Gene Hs.212613

genes like me logo Genes that share expressions with C9orf163: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C9orf163 Gene

Orthologs for C9orf163 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf163 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9orf163 36
  • 99 (a)
OneToOne
Species with no ortholog for C9orf163:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf163 Gene

ENSEMBL:
Gene Tree for C9orf163 (if available)
TreeFam:
Gene Tree for C9orf163 (if available)

Paralogs for C9orf163 Gene

No data available for Paralogs for C9orf163 Gene

Variants for C9orf163 Gene

Sequence variations from dbSNP and Humsavar for C9orf163 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
VAR_032526 -

Structural Variations from Database of Genomic Variants (DGV) for C9orf163 Gene

Variant ID Type Subtype PubMed ID
nsv825173 CNV Gain 20364138
nsv894294 CNV Loss 21882294
dgv8383n71 CNV Loss 21882294
dgv8385n71 CNV Loss 21882294
dgv8386n71 CNV Loss 21882294
dgv8390n71 CNV Loss 21882294
dgv8392n71 CNV Loss 21882294
nsv482928 CNV Loss 15286789
dgv2426e1 CNV Complex 17122850
nsv469918 CNV Loss 18288195
dgv8394n71 CNV Loss 21882294
nsv894367 CNV Loss 21882294
dgv8395n71 CNV Loss 21882294
dgv8396n71 CNV Loss 21882294
dgv8397n71 CNV Gain 21882294
nsv894373 CNV Loss 21882294
nsv894376 CNV Gain+Loss 21882294
esv30005 CNV Loss 17803354
nsv894377 CNV Loss 21882294
dgv8398n71 CNV Gain 21882294
nsv894379 CNV Gain+Loss 21882294
dgv8399n71 CNV Loss 21882294
dgv8400n71 CNV Loss 21882294
nsv894386 CNV Loss 21882294
nsv894387 CNV Gain 21882294

Relevant External Links for C9orf163 Gene

HapMap Linkage Disequilibrium report
C9orf163

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C9orf163 Gene

Disorders for C9orf163 Gene

No disorders were found for C9orf163 Gene.

No data available for UniProtKB/Swiss-Prot for C9orf163 Gene

Publications for C9orf163 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Large-scale mapping of human protein-protein interactions by mass spectrometry. (PMID: 17353931) Ewing R.M. … Figeys D. (Mol. Syst. Biol. 2007) 3
  3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C9orf163 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate C9orf163
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf163
  • Block miRNA regulation of C9orf163 using miScript Target Protectors

Sources for C9orf163 Gene

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