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Aliases for C9orf153 Gene

Aliases for C9orf153 Gene

  • Chromosome 9 Open Reading Frame 153 2 3
  • Uncharacterized Protein C9orf153 3
  • BA507D14.1 3

External Ids for C9orf153 Gene

Summaries for C9orf153 Gene

GeneCards Summary for C9orf153 Gene

C9orf153 (Chromosome 9 Open Reading Frame 153) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf153 Gene

Genomics for C9orf153 Gene

Genomic Location for C9orf153 Gene

Start:
86,220,265 bp from pter
End:
86,259,657 bp from pter
Size:
39,393 bases
Orientation:
Minus strand

Genomic View for C9orf153 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C9orf153 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf153 Gene

Regulatory Elements for C9orf153 Gene

Proteins for C9orf153 Gene

  • Protein details for C9orf153 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TBE3-CI153_HUMAN
    Recommended name:
    Uncharacterized protein C9orf153
    Protein Accession:
    Q5TBE3
    Secondary Accessions:
    • Q5TBE4

    Protein attributes for C9orf153 Gene

    Size:
    101 amino acids
    Molecular mass:
    11254 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C9orf153 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C9orf153 Gene

Proteomics data for C9orf153 Gene at MOPED

Post-translational modifications for C9orf153 Gene

No Post-translational modifications

Other Protein References for C9orf153 Gene

No data available for DME Specific Peptides for C9orf153 Gene

Domains for C9orf153 Gene

Protein Domains for C9orf153 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf153: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf153 Gene

Function for C9orf153 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C9orf153 Gene

Localization for C9orf153 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf153 Gene COMPARTMENTS Subcellular localization image for C9orf153 gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C9orf153 Gene

Pathways for C9orf153 Gene

SuperPathways for C9orf153 Gene

No Data Available

Interacting Proteins for C9orf153 Gene

Gene Ontology (GO) - Biological Process for C9orf153 Gene

None

No data available for Pathways by source for C9orf153 Gene

Transcripts for C9orf153 Gene

Unigene Clusters for C9orf153 Gene

Chromosome 9 open reading frame 153:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf153 Gene

No ASD Table

Relevant External Links for C9orf153 Gene

GeneLoc Exon Structure for
C9orf153
ECgene alternative splicing isoforms for
C9orf153

Expression for C9orf153 Gene

mRNA expression in normal human tissues for C9orf153 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf153 Gene

This gene is overexpressed in Testis (41.9).

SOURCE GeneReport for Unigene cluster for C9orf153 Gene Hs.632073

genes like me logo Genes that share expressions with C9orf153: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C9orf153 Gene

Orthologs for C9orf153 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C9orf153 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf153 35
  • 98.95 (n)
  • 96.84 (a)
C9orf153 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C9orf153 36
  • 13 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C9orf153 36
  • 16 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4921517D22Rik 16
4921517D22Rik 36
  • 13 (a)
OneToOne
Species with no ortholog for C9orf153:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf153 Gene

ENSEMBL:
Gene Tree for C9orf153 (if available)
TreeFam:
Gene Tree for C9orf153 (if available)

Paralogs for C9orf153 Gene

No data available for Paralogs for C9orf153 Gene

Variants for C9orf153 Gene

Sequence variations from dbSNP and Humsavar for C9orf153 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs942284 -- 86,232,562(+) AAGGG(C/T)GTCTC intron-variant
rs942285 -- 86,232,644(+) ATCAG(A/T)AGGAA intron-variant
rs1002960 -- 86,225,000(-) ATAAT(G/T)AGAAG intron-variant
rs1061946 -- 86,259,202(-) CTGAC(C/T)TTGCA intron-variant
rs1547629 -- 86,255,983(+) CTTAC(C/T)CACTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C9orf153 Gene

Variant ID Type Subtype PubMed ID
nsv893536 CNV Gain 21882294
nsv893537 CNV Loss 21882294

Relevant External Links for C9orf153 Gene

HapMap Linkage Disequilibrium report
C9orf153

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C9orf153 Gene

Disorders for C9orf153 Gene

No disorders were found for C9orf153 Gene.

No data available for UniProtKB/Swiss-Prot for C9orf153 Gene

Publications for C9orf153 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C9orf153 Gene

  • antibodies-online peptides for C9orf153
  • antibodies-online antibodies for C9orf153
  • antibodies-online kits for C9orf153

Sources for C9orf153 Gene

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