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Aliases for C9orf147 Gene

Aliases for C9orf147 Gene

  • Chromosome 9 Open Reading Frame 147 2 3 5

External Ids for C9orf147 Gene

Previous GeneCards Identifiers for C9orf147 Gene

  • GC09U900870
  • GC09M114286
  • GC09M115241
  • GC09M115198

Summaries for C9orf147 Gene

GeneCards Summary for C9orf147 Gene

C9orf147 (Chromosome 9 Open Reading Frame 147) is a Protein Coding gene.

Additional gene information for C9orf147 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf147 Gene

Genomics for C9orf147 Gene

GeneHancer (GH) Regulatory Elements for C9orf147 Gene

Promoters and enhancers for C9orf147 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I112488 Enhancer 1.1 Ensembl ENCODE 550.8 +0.1 75 3.2 HDAC1 PKNOX1 FOXA2 ARNT FEZF1 RFX5 ZNF335 TCF12 ZNF766 EGR1 C9orf147 HSDL2 INIP SNX30 ENSG00000226609 KIAA1958
GH09I112793 Enhancer 0.9 Ensembl ENCODE 11.2 -302.9 -302892 0.3 CTCF SAP130 ARID4B MAX IRF4 RAD21 CTBP1 GATA3 VEZF1 SMC3 ENSG00000226609 SNX30 INIP KIAA1958 C9orf147 PIR49803
GH09I112447 Enhancer 0.8 Ensembl ENCODE 12.1 +42.9 42852 0.4 MEIS2 PKNOX1 DPF2 ZEB2 MITF ZNF316 FOXK2 VEZF1 NFE2 EMSY KIAA1958 C9orf147 HSDL2 INIP PIR60820
GH09I112788 Enhancer 0.7 Ensembl ENCODE 11.2 -299.2 -299248 1.8 MITF CTCF IKZF1 USF2 ENSG00000226609 SNX30 INIP C9orf147 KIAA1958 SLC46A2 PIR49803
GH09I112485 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.8 +3.2 3215 2.6 HDGF PKNOX1 CLOCK ARID4B SIN3A DMAP1 ZNF2 SLC30A9 POLR2B CBX5 KIAA1958 HSDL2 C9orf147
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C9orf147 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C9orf147 gene promoter:

Genomic Locations for C9orf147 Gene

Genomic Locations for C9orf147 Gene
chr9:112,433,816-112,490,453
(GRCh38/hg38)
Size:
56,638 bases
Orientation:
Minus strand
chr9:115,196,096-115,254,860
(GRCh37/hg19)

Genomic View for C9orf147 Gene

Genes around C9orf147 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf147 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf147 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf147 Gene

Proteins for C9orf147 Gene

Post-translational modifications for C9orf147 Gene

No Post-translational modifications

Other Protein References for C9orf147 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C9orf147 Gene

Domains & Families for C9orf147 Gene

Suggested Antigen Peptide Sequences for C9orf147 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for C9orf147 Gene

Function for C9orf147 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf147 Gene

Localization for C9orf147 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C9orf147 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C9orf147 Gene

Pathways & Interactions for C9orf147 Gene

SuperPathways for C9orf147 Gene

No Data Available

Interacting Proteins for C9orf147 Gene

Gene Ontology (GO) - Biological Process for C9orf147 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf147 Gene

Drugs & Compounds for C9orf147 Gene

No Compound Related Data Available

Transcripts for C9orf147 Gene

mRNA/cDNA for C9orf147 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf147 Gene

Chromosome 9 open reading frame 147:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf147 Gene

No ASD Table

Relevant External Links for C9orf147 Gene

GeneLoc Exon Structure for
C9orf147
ECgene alternative splicing isoforms for
C9orf147

Expression for C9orf147 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C9orf147 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf147 Gene

This gene is overexpressed in Stomach (x15.2), Adrenal Gland (x6.8), and Ovary (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of C9orf147 Gene:

C9orf147

SOURCE GeneReport for Unigene cluster for C9orf147 Gene:

Hs.662552
genes like me logo Genes that share expression patterns with C9orf147: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C9orf147 Gene

Orthologs for C9orf147 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf147 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9orf147 34
  • 98 (a)
OneToOne
Species where no ortholog for C9orf147 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf147 Gene

ENSEMBL:
Gene Tree for C9orf147 (if available)
TreeFam:
Gene Tree for C9orf147 (if available)

Paralogs for C9orf147 Gene

No data available for Paralogs for C9orf147 Gene

Variants for C9orf147 Gene

Sequence variations from dbSNP and Humsavar for C9orf147 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000013126 -- 112,462,725(-) A/G intron_variant
rs1000019981 -- 112,469,983(-) T/C intron_variant
rs1000186045 -- 112,443,837(-) C/T intron_variant
rs1000278807 -- 112,492,074(-) T/G upstream_transcript_variant
rs1000300419 -- 112,419,246(-) C/T intron_variant

Additional Variant Information for C9orf147 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf147

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C9orf147 Gene

Disorders for C9orf147 Gene

Additional Disease Information for C9orf147

No disorders were found for C9orf147 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf147 Gene

Publications for C9orf147 Gene

No publications were found for C9orf147 Gene.

Products for C9orf147 Gene

Sources for C9orf147 Gene

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