Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C9orf139 Gene

Aliases for C9orf139 Gene

  • Chromosome 9 Open Reading Frame 139 2 3 5

External Ids for C9orf139 Gene

Previous GeneCards Identifiers for C9orf139 Gene

  • GC09P139041
  • GC09P139921
  • GC09P109381

Summaries for C9orf139 Gene

GeneCards Summary for C9orf139 Gene

C9orf139 (Chromosome 9 Open Reading Frame 139) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf139 Gene

Genomics for C9orf139 Gene

Regulatory Elements for C9orf139 Gene

Enhancers for C9orf139 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C9orf139 on UCSC Golden Path with GeneCards custom track

Promoters for C9orf139 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C9orf139 on UCSC Golden Path with GeneCards custom track

Genomic Location for C9orf139 Gene

Chromosome:
9
Start:
137,027,464 bp from pter
End:
137,037,957 bp from pter
Size:
10,494 bases
Orientation:
Plus strand

Genomic View for C9orf139 Gene

Genes around C9orf139 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf139 Gene

Proteins for C9orf139 Gene

  • Protein details for C9orf139 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZV77-CI139_HUMAN
    Recommended name:
    Uncharacterized protein C9orf139
    Protein Accession:
    Q6ZV77
    Secondary Accessions:
    • A2RUA3
    • B9EGW2
    • Q5SPY0
    • Q8N224

    Protein attributes for C9orf139 Gene

    Size:
    190 amino acids
    Molecular mass:
    20001 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC04202.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for C9orf139 Gene

Proteomics data for C9orf139 Gene at MOPED

Post-translational modifications for C9orf139 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C9orf139 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C9orf139 Gene

Domains & Families for C9orf139 Gene

Protein Domains for C9orf139 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf139: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf139 Gene

Function for C9orf139 Gene

genes like me logo Genes that share phenotypes with C9orf139: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C9orf139 Gene

Localization for C9orf139 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf139 Gene COMPARTMENTS Subcellular localization image for C9orf139 gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C9orf139 Gene

Pathways & Interactions for C9orf139 Gene

SuperPathways for C9orf139 Gene

No Data Available

Interacting Proteins for C9orf139 Gene

Gene Ontology (GO) - Biological Process for C9orf139 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf139 Gene

Drugs & Compounds for C9orf139 Gene

No Compound Related Data Available

Transcripts for C9orf139 Gene

mRNA/cDNA for C9orf139 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf139 Gene

Chromosome 9 open reading frame 139:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf139 Gene

No ASD Table

Relevant External Links for C9orf139 Gene

GeneLoc Exon Structure for
C9orf139
ECgene alternative splicing isoforms for
C9orf139

Expression for C9orf139 Gene

mRNA expression in normal human tissues for C9orf139 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf139 Gene

This gene is overexpressed in Whole Blood (x23.3) and Spleen (x4.3).

SOURCE GeneReport for Unigene cluster for C9orf139 Gene Hs.522509

genes like me logo Genes that share expression patterns with C9orf139: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C9orf139 Gene

Orthologs for C9orf139 Gene

Evolution for C9orf139 Gene

ENSEMBL:
Gene Tree for C9orf139 (if available)
TreeFam:
Gene Tree for C9orf139 (if available)

No data available for Orthologs for C9orf139 Gene

Paralogs for C9orf139 Gene

No data available for Paralogs for C9orf139 Gene

Variants for C9orf139 Gene

Sequence variations from dbSNP and Humsavar for C9orf139 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs12337910 - 137,034,983(+) AAAGA(A/G)AAGGG nc-transcript-variant, reference, missense
rs1138628 -- 137,037,759(-) ttcac(A/G/T)ttttt nc-transcript-variant, downstream-variant-500B
rs113218503 -- 137,035,826(+) GGGGC(C/T)GGCCC intron-variant, nc-transcript-variant, utr-variant-3-prime
rs113594406 -- 137,037,967(+) ATTTC(-/T)TTTTT downstream-variant-500B
rs9314871 -- 137,036,797(+) AAAAA(A/C)AATTC intron-variant, nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C9orf139 Gene

Variant ID Type Subtype PubMed ID
nsv469918 CNV Loss 18288195
nsv894387 CNV Gain 21882294
esv2422220 CNV Deletion 17116639
dgv8412n71 CNV Loss 21882294
dgv8415n71 CNV Loss 21882294
dgv8416n71 CNV Loss 21882294
nsv524322 CNV Loss 19592680
nsv894469 CNV Loss 21882294
nsv894483 CNV Loss 21882294
dgv8423n71 CNV Loss 21882294
nsv894500 CNV Loss 21882294
nsv894502 CNV Loss 21882294
nsv894503 CNV Loss 21882294
nsv894506 CNV Gain 21882294
dgv8425n71 CNV Loss 21882294
nsv894514 CNV Loss 21882294
dgv8428n71 CNV Loss 21882294
nsv894521 CNV Loss 21882294
dgv8433n71 CNV Gain 21882294
nsv894550 CNV Gain 21882294
dgv8437n71 CNV Gain 21882294
dgv8438n71 CNV Loss 21882294
dgv8439n71 CNV Loss 21882294
nsv894565 CNV Loss 21882294
dgv8440n71 CNV Loss 21882294
nsv894567 CNV Loss 21882294
nsv513004 CNV Insertion 21212237
nsv894570 CNV Loss 21882294

Variation tolerance for C9orf139 Gene

Residual Variation Intolerance Score: 95.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.09; 50.92% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C9orf139 Gene

Disorders for C9orf139 Gene

Relevant External Links for C9orf139

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C9orf139

No disorders were found for C9orf139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf139 Gene

Publications for C9orf139 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C9orf139 Gene

Sources for C9orf139 Gene

Content