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Aliases for C9orf139 Gene

Aliases for C9orf139 Gene

  • Chromosome 9 Open Reading Frame 139 2 3

External Ids for C9orf139 Gene

Previous GeneCards Identifiers for C9orf139 Gene

  • GC09P139041
  • GC09P139921
  • GC09P109381

Summaries for C9orf139 Gene

GeneCards Summary for C9orf139 Gene

C9orf139 (Chromosome 9 Open Reading Frame 139) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf139 Gene

Genomics for C9orf139 Gene

Regulatory Elements for C9orf139 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for C9orf139 Gene

Start:
137,027,464 bp from pter
End:
137,037,957 bp from pter
Size:
10,494 bases
Orientation:
Plus strand

Genomic View for C9orf139 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C9orf139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf139 Gene

Proteins for C9orf139 Gene

  • Protein details for C9orf139 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZV77-CI139_HUMAN
    Recommended name:
    Uncharacterized protein C9orf139
    Protein Accession:
    Q6ZV77
    Secondary Accessions:
    • A2RUA3
    • B9EGW2
    • Q5SPY0
    • Q8N224

    Protein attributes for C9orf139 Gene

    Size:
    190 amino acids
    Molecular mass:
    20001 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC04202.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for C9orf139 Gene

Proteomics data for C9orf139 Gene at MOPED

Post-translational modifications for C9orf139 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C9orf139 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C9orf139 Gene

Domains for C9orf139 Gene

Protein Domains for C9orf139 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf139: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf139 Gene

Function for C9orf139 Gene

Phenotypes for C9orf139 Gene

GenomeRNAi human phenotypes for C9orf139:
genes like me logo Genes that share phenotypes with C9orf139: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf139

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C9orf139 Gene

Localization for C9orf139 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C9orf139 Gene COMPARTMENTS Subcellular localization image for C9orf139 gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C9orf139 Gene

Pathways for C9orf139 Gene

SuperPathways for C9orf139 Gene

No Data Available

Interacting Proteins for C9orf139 Gene

Gene Ontology (GO) - Biological Process for C9orf139 Gene

None

No data available for Pathways by source for C9orf139 Gene

Transcripts for C9orf139 Gene

mRNA/cDNA for C9orf139 Gene

(1) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf139 Gene

Chromosome 9 open reading frame 139:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf139

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C9orf139
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf139 Gene

No ASD Table

Relevant External Links for C9orf139 Gene

GeneLoc Exon Structure for
C9orf139
ECgene alternative splicing isoforms for
C9orf139

Expression for C9orf139 Gene

mRNA expression in normal human tissues for C9orf139 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf139 Gene

This gene is overexpressed in Whole Blood (23.3) and Spleen (4.3).

SOURCE GeneReport for Unigene cluster for C9orf139 Gene Hs.522509

genes like me logo Genes that share expressions with C9orf139: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C9orf139 Gene

Orthologs for C9orf139 Gene

Evolution for C9orf139 Gene

ENSEMBL:
Gene Tree for C9orf139 (if available)
TreeFam:
Gene Tree for C9orf139 (if available)

No data available for Orthologs for C9orf139 Gene

Paralogs for C9orf139 Gene

No data available for Paralogs for C9orf139 Gene

Variants for C9orf139 Gene

Sequence variations from dbSNP and Humsavar for C9orf139 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs4880193 -- 137,035,482(+) CAGGT(G/T)GAGCT utr-variant-3-prime
rs9314871 -- 137,036,797(+) AAAAA(A/C)AATTC downstream-variant-500B
rs9411240 -- 137,036,859(+) CCACC(A/G)GAGGA downstream-variant-500B
rs9411294 -- 137,037,155(+) TGCCC(C/T)GCGCC downstream-variant-500B
rs12337910 - 137,034,983(+) AAAGA(A/G)AAGGG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for C9orf139 Gene

Variant ID Type Subtype PubMed ID
nsv469918 CNV Loss 18288195
nsv894387 CNV Gain 21882294
esv2422220 CNV Deletion 17116639
dgv8412n71 CNV Loss 21882294
dgv8415n71 CNV Loss 21882294
dgv8416n71 CNV Loss 21882294
nsv524322 CNV Loss 19592680
nsv894469 CNV Loss 21882294
nsv894483 CNV Loss 21882294
dgv8423n71 CNV Loss 21882294
nsv894500 CNV Loss 21882294
nsv894502 CNV Loss 21882294
nsv894503 CNV Loss 21882294
nsv894506 CNV Gain 21882294
dgv8425n71 CNV Loss 21882294
nsv894514 CNV Loss 21882294
dgv8428n71 CNV Loss 21882294
nsv894521 CNV Loss 21882294
dgv8433n71 CNV Gain 21882294
nsv894550 CNV Gain 21882294
dgv8437n71 CNV Gain 21882294
dgv8438n71 CNV Loss 21882294
dgv8439n71 CNV Loss 21882294
nsv894565 CNV Loss 21882294
dgv8440n71 CNV Loss 21882294
nsv894567 CNV Loss 21882294
nsv513004 CNV Insertion 21212237
nsv894570 CNV Loss 21882294

Relevant External Links for C9orf139 Gene

HapMap Linkage Disequilibrium report
C9orf139

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C9orf139 Gene

Disorders for C9orf139 Gene

No disorders were found for C9orf139 Gene.

No data available for UniProtKB/Swiss-Prot for C9orf139 Gene

Publications for C9orf139 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C9orf139 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate C9orf139
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf139
    • Block miRNA regulation of C9orf139 using miScript Target Protectors

    Sources for C9orf139 Gene

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