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Aliases for C9orf135-AS1 Gene

Subcategory (RNA class) for C9orf135-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C9orf135-AS1 Gene

  • C9orf135 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for C9orf135-AS1 Gene

Previous GeneCards Identifiers for C9orf135-AS1 Gene

  • GC09M072436

Summaries for C9orf135-AS1 Gene

GeneCards Summary for C9orf135-AS1 Gene

C9orf135-AS1 (C9orf135 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf135-AS1 Gene

Genomics for C9orf135-AS1 Gene

Regulatory Elements for C9orf135-AS1 Gene

Enhancers for C9orf135-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G069811 0.7 ENCODE 5 +9.2 9219 0.6 SMARCE1 ZNF639 PKNOX1 L3MBTL2 MAFG CREB3 ARID1B ZNF766 ZNF316 PBX2 PTAR1 C9orf135-AS1 LOC105376076
GH09G069823 0.6 ENCODE 5.3 -4.2 -4192 3.7 RFX1 GATA2 POU5F1 NR3C1 NFE2 FOS CHD7 ATF2 C9orf135 PTAR1 C9orf135-AS1 RN7SL570P
GH09G069763 0.9 Ensembl ENCODE 0.2 +56.3 56268 2.0 CAVIN1 ZNF740 RNF2 DDX20 RELA ZNF592 ATM IRF9 ZNF366 ZNF512 PTAR1 LOC105376076 C9orf135-AS1
GH09G069806 0.4 ENCODE 0.4 +14.6 14640 0.2 MEF2D TBP C9orf135-AS1 LOC105376076
GH09G069772 0.6 ENCODE 0.2 +48.5 48500 0.2 MAFG BACH1 RAD51 ZNF316 NFE2L1 NFE2 FOS MAFK EMSY NFE2L2 LOC105376076 C9orf135-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C9orf135-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for C9orf135-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000235630 39 201 ATF1 CREB3L1 SUZ12 DEAF1 BMI1 ETS1 E2F1 ZNF766 POLR2A ZNF143

Genomic Location for C9orf135-AS1 Gene

Chromosome:
9
Start:
69,818,983 bp from pter
End:
69,820,739 bp from pter
Size:
1,757 bases
Orientation:
Minus strand

Genomic View for C9orf135-AS1 Gene

Genes around C9orf135-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf135-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf135-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf135-AS1 Gene

Proteins for C9orf135-AS1 Gene

Post-translational modifications for C9orf135-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C9orf135-AS1 Gene

Domains & Families for C9orf135-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf135-AS1 Gene

Function for C9orf135-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf135-AS1 Gene

Localization for C9orf135-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C9orf135-AS1 Gene

Pathways & Interactions for C9orf135-AS1 Gene

SuperPathways for C9orf135-AS1 Gene

No Data Available

Interacting Proteins for C9orf135-AS1 Gene

Gene Ontology (GO) - Biological Process for C9orf135-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf135-AS1 Gene

Drugs & Compounds for C9orf135-AS1 Gene

No Compound Related Data Available

Transcripts for C9orf135-AS1 Gene

mRNA/cDNA for C9orf135-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf135-AS1 Gene

No ASD Table

Relevant External Links for C9orf135-AS1 Gene

GeneLoc Exon Structure for
C9orf135-AS1
ECgene alternative splicing isoforms for
C9orf135-AS1

Expression for C9orf135-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C9orf135-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf135-AS1 Gene

This gene is overexpressed in Testis (x50.8).
genes like me logo Genes that share expression patterns with C9orf135-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C9orf135-AS1 Gene

Orthologs for C9orf135-AS1 Gene

Evolution for C9orf135-AS1 Gene

ENSEMBL:
Gene Tree for C9orf135-AS1 (if available)
TreeFam:
Gene Tree for C9orf135-AS1 (if available)

No data available for Orthologs for C9orf135-AS1 Gene

Paralogs for C9orf135-AS1 Gene

No data available for Paralogs for C9orf135-AS1 Gene

Variants for C9orf135-AS1 Gene

Sequence variations from dbSNP and Humsavar for C9orf135-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000268387 -- 69,820,512(+) ACTCG(-/GGGT)GGGTT intron-variant, upstream-variant-2KB
rs1000406155 -- 69,820,184(+) CCCAG(C/T)AGTTT nc-transcript-variant, upstream-variant-2KB
rs1000701852 -- 69,819,080(+) GTTTA(A/C/T)TTGGT intron-variant, upstream-variant-2KB
rs1001135539 -- 69,819,297(+) GAATG(G/T)TCTCT intron-variant, upstream-variant-2KB
rs1001968353 -- 69,819,818(+) GCAGC(A/G)TCATA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C9orf135-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv6552 CNV insertion 18451855
nsv831611 CNV gain 17160897

Relevant External Links for C9orf135-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf135-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C9orf135-AS1 Gene

Disorders for C9orf135-AS1 Gene

Relevant External Links for C9orf135-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C9orf135-AS1

No disorders were found for C9orf135-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf135-AS1 Gene

Publications for C9orf135-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C9orf135-AS1 Gene

Sources for C9orf135-AS1 Gene

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