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Aliases for C9orf135-AS1 Gene

Subcategory (RNA class) for C9orf135-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C9orf135-AS1 Gene

  • C9orf135 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for C9orf135-AS1 Gene

Previous GeneCards Identifiers for C9orf135-AS1 Gene

  • GC09M072436

Summaries for C9orf135-AS1 Gene

GeneCards Summary for C9orf135-AS1 Gene

C9orf135-AS1 (C9orf135 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf135-AS1 Gene

Genomics for C9orf135-AS1 Gene

Regulatory Elements for C9orf135-AS1 Gene

Enhancers for C9orf135-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F069823 0.2 ENCODE 5.3 -4.2 -4192 3.7 RFX1 POU5F1 NFE2 ATF2 C9orf135 PTAR1 C9orf135-AS1 RN7SL570P
GH09F069811 0.8 ENCODE 5 +9.2 9219 0.6 ZNF639 PKNOX1 MAFG ARID1B CREB3 ZNF316 PBX2 NFE2L1 TRIM24 NFE2 PTAR1 C9orf135-AS1 LOC105376077 LOC105376076
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C9orf135-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for C9orf135-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001909298 -62 799 SUZ12 CREB3L1 DEAF1 ETS1 POLR2A ZNF143 CREM THAP11 RFX1 HCFC1

Genomic Location for C9orf135-AS1 Gene

Chromosome:
9
Start:
69,818,983 bp from pter
End:
69,820,739 bp from pter
Size:
1,757 bases
Orientation:
Minus strand

Genomic View for C9orf135-AS1 Gene

Genes around C9orf135-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf135-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf135-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf135-AS1 Gene

Proteins for C9orf135-AS1 Gene

Post-translational modifications for C9orf135-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C9orf135-AS1 Gene

Domains & Families for C9orf135-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf135-AS1 Gene

Function for C9orf135-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf135-AS1 Gene

Localization for C9orf135-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C9orf135-AS1 Gene

Pathways & Interactions for C9orf135-AS1 Gene

SuperPathways for C9orf135-AS1 Gene

No Data Available

Interacting Proteins for C9orf135-AS1 Gene

Gene Ontology (GO) - Biological Process for C9orf135-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf135-AS1 Gene

Transcripts for C9orf135-AS1 Gene

mRNA/cDNA for C9orf135-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf135-AS1 Gene

No ASD Table

Relevant External Links for C9orf135-AS1 Gene

GeneLoc Exon Structure for
C9orf135-AS1
ECgene alternative splicing isoforms for
C9orf135-AS1

Expression for C9orf135-AS1 Gene

mRNA expression in normal human tissues for C9orf135-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf135-AS1 Gene

This gene is overexpressed in Testis (x50.8).
genes like me logo Genes that share expression patterns with C9orf135-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C9orf135-AS1 Gene

Orthologs for C9orf135-AS1 Gene

Evolution for C9orf135-AS1 Gene

ENSEMBL:
Gene Tree for C9orf135-AS1 (if available)
TreeFam:
Gene Tree for C9orf135-AS1 (if available)

No data available for Orthologs for C9orf135-AS1 Gene

Paralogs for C9orf135-AS1 Gene

No data available for Paralogs for C9orf135-AS1 Gene

Variants for C9orf135-AS1 Gene

Sequence variations from dbSNP and Humsavar for C9orf135-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10868121 -- 69,820,169(+) GCTCA(C/T)GCCTG nc-transcript-variant, upstream-variant-2KB
rs11140440 -- 69,819,357(+) GTAAG(A/G)CACTT intron-variant, upstream-variant-2KB
rs111459512 -- 69,819,858(+) ACTCC(A/C)CTCTA nc-transcript-variant, upstream-variant-2KB
rs11450014 -- 69,821,432(+) CACAC(-/A)AGAGC intron-variant, upstream-variant-2KB
rs116710165 -- 69,819,224(+) ACAGA(A/G)GAGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C9orf135-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv6552 CNV insertion 18451855
nsv831611 CNV gain 17160897

Relevant External Links for C9orf135-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf135-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C9orf135-AS1 Gene

Disorders for C9orf135-AS1 Gene

Relevant External Links for C9orf135-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C9orf135-AS1

No disorders were found for C9orf135-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf135-AS1 Gene

Publications for C9orf135-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C9orf135-AS1 Gene

Sources for C9orf135-AS1 Gene

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