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Aliases for C9orf129 Gene

Aliases for C9orf129 Gene

  • Chromosome 9 Open Reading Frame 129 2 3 5
  • Putative Uncharacterized Protein C9orf129 3
  • BA165J3.3 3

External Ids for C9orf129 Gene

Previous GeneCards Identifiers for C9orf129 Gene

  • GC00U921013
  • GC09U900668
  • GC09M095121
  • GC09M096080
  • GC09M065757

Summaries for C9orf129 Gene

GeneCards Summary for C9orf129 Gene

C9orf129 (Chromosome 9 Open Reading Frame 129) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf129 Gene

Genomics for C9orf129 Gene

Regulatory Elements for C9orf129 Gene

Enhancers for C9orf129 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G093345 0.5 ENCODE 16.9 -0.2 -197 1.8 POLR2A SMARCA4 ZNF133 RBBP5 EZH2 C9orf129 ENSG00000203364 ENSG00000227603 GC09P093405
GH09G093200 1.5 Ensembl ENCODE dbSUPER 5.2 +139.9 139936 12.9 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ZNF263 SP5 ZHX2 RNU6-829P ENSG00000203364 WNK2 C9orf129 PIR56775
GH09G093354 0.7 ENCODE 8.9 -8.2 -8231 0.6 GATAD2A SOX5 ELF3 SOX13 TEAD1 NFIA ARID4B CEBPB NR3C1 ZNF644 RNU6-829P C9orf129 WNK2 GC09P093405
GH09G093295 0.7 FANTOM5 3.4 +51.1 51067 0.3 ELF3 GATAD2A ZNF263 SP5 CEBPG RARA FOS RXRB RNU6-829P WNK2 ZNF484 C9orf129 PIR56775
GH09G093342 0.6 ENCODE 0.7 +3.8 3781 0.2 ZNF687 NFIB MNT KLF4 DPF2 ZNF579 ZNF217 CTBP1 RCOR1 C9orf129 PIR56775
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C9orf129 on UCSC Golden Path with GeneCards custom track

Promoters for C9orf129 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000238024 14 401 SMARCA4 RBBP5 EZH2

Genomic Location for C9orf129 Gene

Chromosome:
9
Start:
93,318,199 bp from pter
End:
93,346,414 bp from pter
Size:
28,216 bases
Orientation:
Minus strand

Genomic View for C9orf129 Gene

Genes around C9orf129 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf129 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf129 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf129 Gene

Proteins for C9orf129 Gene

  • Protein details for C9orf129 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T035-CI129_HUMAN
    Recommended name:
    Putative uncharacterized protein C9orf129
    Protein Accession:
    Q5T035

    Protein attributes for C9orf129 Gene

    Size:
    196 amino acids
    Molecular mass:
    20715 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C9orf129 Gene

Post-translational modifications for C9orf129 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C9orf129 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C9orf129 Gene

Domains & Families for C9orf129 Gene

Protein Domains for C9orf129 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf129: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf129 Gene

Function for C9orf129 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf129 Gene

Localization for C9orf129 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C9orf129 gene
Compartment Confidence
nucleus 4
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for C9orf129 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with C9orf129: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C9orf129 Gene

Pathways & Interactions for C9orf129 Gene

SuperPathways for C9orf129 Gene

No Data Available

Interacting Proteins for C9orf129 Gene

Gene Ontology (GO) - Biological Process for C9orf129 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035357 peroxisome proliferator activated receptor signaling pathway IBA --
GO:0045444 fat cell differentiation IBA --
genes like me logo Genes that share ontologies with C9orf129: view

No data available for Pathways by source and SIGNOR curated interactions for C9orf129 Gene

Drugs & Compounds for C9orf129 Gene

No Compound Related Data Available

Transcripts for C9orf129 Gene

mRNA/cDNA for C9orf129 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf129 Gene

Chromosome 9 open reading frame 129:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf129 Gene

No ASD Table

Relevant External Links for C9orf129 Gene

GeneLoc Exon Structure for
C9orf129
ECgene alternative splicing isoforms for
C9orf129

Expression for C9orf129 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C9orf129 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C9orf129 Gene

This gene is overexpressed in Brain - Cortex (x6.2), Brain - Frontal Cortex (BA9) (x6.1), Brain - Anterior cingulate cortex (BA24) (x6.1), and Brain - Hypothalamus (x4.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C9orf129 Gene



NURSA nuclear receptor signaling pathways regulating expression of C9orf129 Gene:

C9orf129

SOURCE GeneReport for Unigene cluster for C9orf129 Gene:

Hs.575636
genes like me logo Genes that share expression patterns with C9orf129: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C9orf129 Gene

Orthologs for C9orf129 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf129 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf129 34
  • 98.13 (n)
C9orf129 35
  • 97 (a)
OneToOne
Species where no ortholog for C9orf129 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf129 Gene

ENSEMBL:
Gene Tree for C9orf129 (if available)
TreeFam:
Gene Tree for C9orf129 (if available)

Paralogs for C9orf129 Gene

(1) SIMAP similar genes for C9orf129 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with C9orf129: view

No data available for Paralogs for C9orf129 Gene

Variants for C9orf129 Gene

Sequence variations from dbSNP and Humsavar for C9orf129 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000260074 -- 93,326,870(+) ACCAC(A/G)CTCAC intron-variant, nc-transcript-variant
rs1000265974 -- 93,347,837(+) TGGGA(C/T)CCCCA upstream-variant-2KB
rs1000416451 -- 93,348,159(+) AGCCC(A/G)AGAAA upstream-variant-2KB
rs1000720623 -- 93,348,008(+) GCCTG(C/T)TTGGT upstream-variant-2KB
rs1000873717 -- 93,347,794(+) CCTGG(C/G)TCATC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C9orf129 Gene

Variant ID Type Subtype PubMed ID
esv7472 OTHER inversion 19470904
nsv972782 CNV duplication 23825009
nsv972783 CNV duplication 23825009

Variation tolerance for C9orf129 Gene

Residual Variation Intolerance Score: 84.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.80; 89.54% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C9orf129 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf129

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C9orf129 Gene

Disorders for C9orf129 Gene

Relevant External Links for C9orf129

Genetic Association Database (GAD)
C9orf129
Human Genome Epidemiology (HuGE) Navigator
C9orf129
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C9orf129

No disorders were found for C9orf129 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf129 Gene

Publications for C9orf129 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 64
  2. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D. … Mitchell G.F. (BMC Med. Genet. 2007) 46 64
  3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4 64

Products for C9orf129 Gene

Sources for C9orf129 Gene

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