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Aliases for C9orf106 Gene

Aliases for C9orf106 Gene

  • Chromosome 9 Open Reading Frame 106 2 3 5
  • BA65J3.5 3

External Ids for C9orf106 Gene

Previous GeneCards Identifiers for C9orf106 Gene

  • GC09U900597
  • GC09P129163
  • GC09P131123
  • GC09P132083
  • GC09P101689

Summaries for C9orf106 Gene

GeneCards Summary for C9orf106 Gene

C9orf106 (Chromosome 9 Open Reading Frame 106) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf106 Gene

Genomics for C9orf106 Gene

Regulatory Elements for C9orf106 Gene

Enhancers for C9orf106 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C9orf106 on UCSC Golden Path with GeneCards custom track

Promoters for C9orf106 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C9orf106 on UCSC Golden Path with GeneCards custom track

Genomic Location for C9orf106 Gene

Chromosome:
9
Start:
129,321,016 bp from pter
End:
129,324,905 bp from pter
Size:
3,890 bases
Orientation:
Plus strand

Genomic View for C9orf106 Gene

Genes around C9orf106 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf106 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf106 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf106 Gene

Proteins for C9orf106 Gene

  • Protein details for C9orf106 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NAJ2-CI106_HUMAN
    Recommended name:
    Putative uncharacterized protein C9orf106
    Protein Accession:
    Q8NAJ2

    Protein attributes for C9orf106 Gene

    Size:
    232 amino acids
    Molecular mass:
    25113 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C9orf106 Gene

Proteomics data for C9orf106 Gene at MOPED

Post-translational modifications for C9orf106 Gene

No Post-translational modifications

Other Protein References for C9orf106 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C9orf106 Gene

Domains & Families for C9orf106 Gene

Protein Domains for C9orf106 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C9orf106 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf106: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C9orf106 Gene

Function for C9orf106 Gene

Phenotypes for C9orf106 Gene

GenomeRNAi human phenotypes for C9orf106:
genes like me logo Genes that share phenotypes with C9orf106: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf106 Gene

Localization for C9orf106 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C9orf106 Gene

Pathways & Interactions for C9orf106 Gene

SuperPathways for C9orf106 Gene

No Data Available

Interacting Proteins for C9orf106 Gene

Gene Ontology (GO) - Biological Process for C9orf106 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf106 Gene

Drugs & Compounds for C9orf106 Gene

No Compound Related Data Available

Transcripts for C9orf106 Gene

mRNA/cDNA for C9orf106 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf106 Gene

Chromosome 9 open reading frame 106:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf106 Gene

No ASD Table

Relevant External Links for C9orf106 Gene

GeneLoc Exon Structure for
C9orf106
ECgene alternative splicing isoforms for
C9orf106

Expression for C9orf106 Gene

mRNA expression in normal human tissues for C9orf106 Gene

SOURCE GeneReport for Unigene cluster for C9orf106 Gene Hs.449434

genes like me logo Genes that share expression patterns with C9orf106: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C9orf106 Gene

Orthologs for C9orf106 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf106 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf106 35
  • 98.85 (n)
  • 96.98 (a)
Species with no ortholog for C9orf106:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf106 Gene

ENSEMBL:
Gene Tree for C9orf106 (if available)
TreeFam:
Gene Tree for C9orf106 (if available)

Paralogs for C9orf106 Gene

No data available for Paralogs for C9orf106 Gene

Variants for C9orf106 Gene

Sequence variations from dbSNP and Humsavar for C9orf106 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs913770 -- 129,322,342(+) CCGGG(A/G)GACAC reference, missense
rs913771 -- 129,322,606(+) AGGGA(A/G)GCAGA downstream-variant-500B
rs113109242 -- 129,319,303(+) CGACC(C/G)CTCTC upstream-variant-2KB
rs113276848 -- 129,322,192(+) GTGAC(A/C/G)CTGGC reference, missense
rs113376944 -- 129,319,518(+) CTCTT(C/T)TTTCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C9orf106 Gene

Variant ID Type Subtype PubMed ID
nsv893909 CNV Loss 21882294
nsv893910 CNV Loss 21882294
nsv893911 CNV Gain 21882294
nsv6726 CNV Insertion 18451855
nsv527231 CNV Loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for C9orf106 Gene

Disorders for C9orf106 Gene

Relevant External Links for C9orf106

Genetic Association Database (GAD)
C9orf106
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C9orf106

No disorders were found for C9orf106 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf106 Gene

Publications for C9orf106 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C9orf106 Gene

Sources for C9orf106 Gene

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