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Aliases for C9orf106 Gene

Aliases for C9orf106 Gene

  • Chromosome 9 Open Reading Frame 106 2 3
  • Putative Uncharacterized Protein C9orf106 3
  • BA65J3.5 3

External Ids for C9orf106 Gene

Previous GeneCards Identifiers for C9orf106 Gene

  • GC09U900597
  • GC09P129163
  • GC09P131123
  • GC09P132083
  • GC09P101689

Summaries for C9orf106 Gene

GeneCards Summary for C9orf106 Gene

C9orf106 (Chromosome 9 Open Reading Frame 106) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf106 Gene

Genomics for C9orf106 Gene

Regulatory Elements for C9orf106 Gene

Genomic Location for C9orf106 Gene

Start:
129,321,016 bp from pter
End:
129,324,905 bp from pter
Size:
3,890 bases
Orientation:
Plus strand

Genomic View for C9orf106 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C9orf106 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf106 Gene

Proteins for C9orf106 Gene

  • Protein details for C9orf106 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NAJ2-CI106_HUMAN
    Recommended name:
    Putative uncharacterized protein C9orf106
    Protein Accession:
    Q8NAJ2
    Secondary Accessions:

    Protein attributes for C9orf106 Gene

    Size:
    232 amino acids
    Molecular mass:
    25113 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C9orf106 Gene

Proteomics data for C9orf106 Gene at MOPED

Post-translational modifications for C9orf106 Gene

No Post-translational modifications

Other Protein References for C9orf106 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C9orf106 Gene

Domains for C9orf106 Gene

Protein Domains for C9orf106 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C9orf106 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf106: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C9orf106 Gene

Function for C9orf106 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf106

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C9orf106 Gene

Localization for C9orf106 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C9orf106 Gene

Pathways for C9orf106 Gene

SuperPathways for C9orf106 Gene

No Data Available

Interacting Proteins for C9orf106 Gene

Gene Ontology (GO) - Biological Process for C9orf106 Gene

None

No data available for Pathways by source for C9orf106 Gene

Transcripts for C9orf106 Gene

mRNA/cDNA for C9orf106 Gene

(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf106 Gene

Chromosome 9 open reading frame 106:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C9orf106

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C9orf106
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf106 Gene

No ASD Table

Relevant External Links for C9orf106 Gene

GeneLoc Exon Structure for
C9orf106
ECgene alternative splicing isoforms for
C9orf106

Expression for C9orf106 Gene

mRNA expression in normal human tissues for C9orf106 Gene

SOURCE GeneReport for Unigene cluster for C9orf106 Gene Hs.449434

genes like me logo Genes that share expressions with C9orf106: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for C9orf106 Gene

Orthologs for C9orf106 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf106 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf106 35
  • 98.85 (n)
  • 96.98 (a)
Species with no ortholog for C9orf106:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf106 Gene

ENSEMBL:
Gene Tree for C9orf106 (if available)
TreeFam:
Gene Tree for C9orf106 (if available)

Paralogs for C9orf106 Gene

No data available for Paralogs for C9orf106 Gene

Variants for C9orf106 Gene

Sequence variations from dbSNP and Humsavar for C9orf106 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs913770 -- 129,322,342(+) CCGGG(A/G)GACAC missense, reference
rs913771 -- 129,322,606(+) AGGGA(A/G)GCAGA downstream-variant-500B
rs4489411 -- 129,322,859(+) CCCAG(C/T)GCTCC downstream-variant-500B
rs4836654 -- 129,320,091(+) TTCAG(C/G)GCCGG upstream-variant-2KB
rs6478890 -- 129,322,958(+) AAAAC(A/G)TCTTT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for C9orf106 Gene

Variant ID Type Subtype PubMed ID
nsv893909 CNV Loss 21882294
nsv893910 CNV Loss 21882294
nsv893911 CNV Gain 21882294
nsv6726 CNV Insertion 18451855
nsv527231 CNV Loss 19592680

Relevant External Links for C9orf106 Gene

HapMap Linkage Disequilibrium report
C9orf106

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C9orf106 Gene

Disorders for C9orf106 Gene

Relevant External Links for C9orf106

Genetic Association Database (GAD)
C9orf106
genes like me logo Genes that share disorders with C9orf106: view

No data available for UniProtKB/Swiss-Prot for C9orf106 Gene

Publications for C9orf106 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. (PMID: 22041458) Clark S.L. … van den Oord E.J. (Psychol Med 2012) 48
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C9orf106 Gene

Sources for C9orf106 Gene

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