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Aliases for C8orf89 Gene

Aliases for C8orf89 Gene

  • Chromosome 8 Open Reading Frame 89 2 3 5

External Ids for C8orf89 Gene

Summaries for C8orf89 Gene

GeneCards Summary for C8orf89 Gene

C8orf89 (Chromosome 8 Open Reading Frame 89) is a Protein Coding gene.

Additional gene information for C8orf89 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C8orf89 Gene

Genomics for C8orf89 Gene

Regulatory Elements for C8orf89 Gene

Enhancers for C8orf89 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H073285 0.7 Ensembl ENCODE 0.7 -0.3 -302 0 ZNF202 POLR2A RPL7 RDH10-AS1 C8orf89 RDH10
GH08H073281 0.6 Ensembl 0.7 +3.8 3812 0 ZNF664 CTCF IKZF1 TEAD2 PRDM1 TEAD3 FOXA1 RDH10-AS1 FAM213AP2 C8orf89
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C8orf89 on UCSC Golden Path with GeneCards custom track

Genomic Location for C8orf89 Gene

Chromosome:
8
Start:
73,241,329 bp from pter
End:
73,285,712 bp from pter
Size:
44,384 bases
Orientation:
Minus strand

Genomic View for C8orf89 Gene

Genes around C8orf89 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C8orf89 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C8orf89 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C8orf89 Gene

Proteins for C8orf89 Gene

  • Protein details for C8orf89 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DMQ9-CH089_HUMAN
    Recommended name:
    Putative uncharacterized protein C8orf89
    Protein Accession:
    P0DMQ9

    Protein attributes for C8orf89 Gene

    Size:
    161 amino acids
    Molecular mass:
    18160 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C8orf89 Gene

Post-translational modifications for C8orf89 Gene

No Post-translational modifications

Other Protein References for C8orf89 Gene

No data available for DME Specific Peptides for C8orf89 Gene

Domains & Families for C8orf89 Gene

Gene Families for C8orf89 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C8orf89 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C8orf89: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C8orf89 Gene

Function for C8orf89 Gene

Phenotypes From GWAS Catalog for C8orf89 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C8orf89 Gene

Localization for C8orf89 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C8orf89 Gene

Pathways & Interactions for C8orf89 Gene

SuperPathways for C8orf89 Gene

No Data Available

Interacting Proteins for C8orf89 Gene

Gene Ontology (GO) - Biological Process for C8orf89 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C8orf89 Gene

Drugs & Compounds for C8orf89 Gene

No Compound Related Data Available

Transcripts for C8orf89 Gene

mRNA/cDNA for C8orf89 Gene

(3) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C8orf89 Gene

No ASD Table

Relevant External Links for C8orf89 Gene

GeneLoc Exon Structure for
C8orf89
ECgene alternative splicing isoforms for
C8orf89

Expression for C8orf89 Gene

NURSA nuclear receptor signaling pathways regulating expression of C8orf89 Gene:

C8orf89
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C8orf89 Gene

Orthologs for C8orf89 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C8orf89 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC464231 33
  • 99.17 (n)
cow
(Bos Taurus)
Mammalia LOC100848558 33
  • 86.25 (n)
mouse
(Mus musculus)
Mammalia 4930444P10Rik 33 16
  • 78.43 (n)
Species where no ortholog for C8orf89 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C8orf89 Gene

ENSEMBL:
Gene Tree for C8orf89 (if available)
TreeFam:
Gene Tree for C8orf89 (if available)

Paralogs for C8orf89 Gene

No data available for Paralogs for C8orf89 Gene

Variants for C8orf89 Gene

Sequence variations from dbSNP and Humsavar for C8orf89 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000019050 -- 73,278,980(+) TTAAA(A/C)GGACA intron-variant
rs1000103164 -- 73,254,826(+) ACAAC(C/T)ATCTG intron-variant
rs1000109472 -- 73,262,730(+) TAGGA(A/C)TGCTT intron-variant
rs1000183929 -- 73,279,662(+) CAAGA(A/G)GTGAG intron-variant
rs1000257273 -- 73,279,988(+) CCTGA(A/G)GCAGA intron-variant

Relevant External Links for C8orf89 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C8orf89

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C8orf89 Gene

Disorders for C8orf89 Gene

Relevant External Links for C8orf89

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C8orf89

No disorders were found for C8orf89 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C8orf89 Gene

Publications for C8orf89 Gene

  1. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C … Lander ES (Nature 2006) 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for C8orf89 Gene

Sources for C8orf89 Gene

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