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Aliases for C8orf82 Gene

Aliases for C8orf82 Gene

  • Chromosome 8 Open Reading Frame 82 2 3 5

External Ids for C8orf82 Gene

Previous GeneCards Identifiers for C8orf82 Gene

  • GC08M145723
  • GC08M145751
  • GC08M140865

Summaries for C8orf82 Gene

GeneCards Summary for C8orf82 Gene

C8orf82 (Chromosome 8 Open Reading Frame 82) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C8orf82 Gene

Genomics for C8orf82 Gene

Regulatory Elements for C8orf82 Gene

Enhancers for C8orf82 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G144455 1.4 Ensembl ENCODE 15.8 +72.7 72686 1.6 HNRNPUL1 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 ZFP64 SIN3A ZNF2 ZNF251 ZNF623 ZNF250 ZNF34 LRRC14 ZNF517 GPAA1 VPS28 TMED10P1 ENSG00000255164
GH08G144530 1.3 ENCODE dbSUPER 11.5 +0.2 188 1.5 HDGF CREB3L1 AGO1 ARID4B SIN3A FEZF1 DMAP1 SLC30A9 ZNF143 ZNF207 C8orf82 LRRC24
GH08G144521 1.3 ENCODE dbSUPER 11.4 +6.4 6360 2.5 HDGF CREB3L1 AGO1 SIN3A YY1 ZNF143 ZNF207 KLF13 SP3 REST PPP1R16A C8orf82 RECQL4 GPAA1 GC08M144566 PIR54029 PIR49945 GC08P144524
GH08G143914 2.2 FANTOM5 Ensembl ENCODE dbSUPER 6.6 +592.0 592002 45.2 CREB3L1 MLX AGO1 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 PLEC ZNF251 ZNF517 ZNF250 LOC105375803 LRRC14 ZNF696 ZNF34 ZNF623 CYHR1
GH08G143968 1.7 Ensembl ENCODE dbSUPER 5.7 +554.9 554893 11.0 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D PLEC MAF1 WDR97 MIR661 PARP10 SPATC1 EXOSC4 ENSG00000255224 GPAA1 CYC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C8orf82 on UCSC Golden Path with GeneCards custom track

Promoters for C8orf82 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000232264 32 1401 HDGF CREB3L1 AGO1 ARID4B SIN3A FEZF1 DMAP1 SLC30A9 ZNF143 ZNF207

Transcription factor binding sites by QIAGEN in the C8orf82 gene promoter:

Genomic Location for C8orf82 Gene

Chromosome:
8
Start:
144,525,733 bp from pter
End:
144,529,132 bp from pter
Size:
3,400 bases
Orientation:
Minus strand

Genomic View for C8orf82 Gene

Genes around C8orf82 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C8orf82 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C8orf82 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C8orf82 Gene

Proteins for C8orf82 Gene

  • Protein details for C8orf82 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P1X6-CH082_HUMAN
    Recommended name:
    UPF0598 protein C8orf82
    Protein Accession:
    Q6P1X6
    Secondary Accessions:
    • Q6GMR2
    • Q6P2Q7

    Protein attributes for C8orf82 Gene

    Size:
    216 amino acids
    Molecular mass:
    23889 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C8orf82 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C8orf82 Gene

Post-translational modifications for C8orf82 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C8orf82 Gene

No data available for DME Specific Peptides for C8orf82 Gene

Domains & Families for C8orf82 Gene

Protein Domains for C8orf82 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C8orf82 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6P1X6

UniProtKB/Swiss-Prot:

CH082_HUMAN :
  • Belongs to the UPF0598 family.
Family:
  • Belongs to the UPF0598 family.
genes like me logo Genes that share domains with C8orf82: view

No data available for Gene Families for C8orf82 Gene

Function for C8orf82 Gene

Phenotypes for C8orf82 Gene

genes like me logo Genes that share phenotypes with C8orf82: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C8orf82 Gene

Localization for C8orf82 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C8orf82 gene
Compartment Confidence
mitochondrion 3
nucleus 2
peroxisome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C8orf82 Gene

Pathways & Interactions for C8orf82 Gene

SuperPathways for C8orf82 Gene

No Data Available

Interacting Proteins for C8orf82 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000434593%0d%0a9606.ENSP00000452762%0d%0a
Selected Interacting proteins: Q6P1X6-CH082_HUMAN ENSP00000434593 for C8orf82 Gene via IID STRING

Gene Ontology (GO) - Biological Process for C8orf82 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C8orf82 Gene

Drugs & Compounds for C8orf82 Gene

No Compound Related Data Available

Transcripts for C8orf82 Gene

Unigene Clusters for C8orf82 Gene

Chromosome 8 open reading frame 82:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C8orf82 Gene

No ASD Table

Relevant External Links for C8orf82 Gene

GeneLoc Exon Structure for
C8orf82
ECgene alternative splicing isoforms for
C8orf82

Expression for C8orf82 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C8orf82 Gene

Protein differential expression in normal tissues from HIPED for C8orf82 Gene

This gene is overexpressed in Liver (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C8orf82 Gene



Protein tissue co-expression partners for C8orf82 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of C8orf82 Gene:

C8orf82

SOURCE GeneReport for Unigene cluster for C8orf82 Gene:

Hs.105685
genes like me logo Genes that share expression patterns with C8orf82: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C8orf82 Gene

Orthologs for C8orf82 Gene

This gene was present in the common ancestor of animals.

Orthologs for C8orf82 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C8H8orf82 34
  • 98.92 (n)
C8ORF82 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C14H8orf82 34 35
  • 87.8 (n)
mouse
(Mus musculus)
Mammalia C030006K11Rik 34 16 35
  • 84.1 (n)
rat
(Rattus norvegicus)
Mammalia MGC94207 34
  • 83.33 (n)
oppossum
(Monodelphis domestica)
Mammalia C8orf82 35
  • 64 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C8orf82 35
  • 27 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C20H8orf82 35
  • 55 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011455 34
  • 56.87 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG30010 34 35
  • 56.76 (n)
worm
(Caenorhabditis elegans)
Secernentea CELE_F59C6.12 34
  • 50 (n)
F59C6.12 35
  • 43 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 42 (a)
OneToOne
Species where no ortholog for C8orf82 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for C8orf82 Gene

ENSEMBL:
Gene Tree for C8orf82 (if available)
TreeFam:
Gene Tree for C8orf82 (if available)

Paralogs for C8orf82 Gene

No data available for Paralogs for C8orf82 Gene

Variants for C8orf82 Gene

Sequence variations from dbSNP and Humsavar for C8orf82 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000833019 -- 144,528,213(+) AGGGA(A/G)GCGCG intron-variant, upstream-variant-2KB
rs1000962468 -- 144,530,022(+) AGGAG(A/G)AAGGG upstream-variant-2KB, utr-variant-3-prime
rs1001058798 -- 144,531,044(+) CCTTT(C/T)GGCTC intron-variant, upstream-variant-2KB
rs1001077080 -- 144,529,899(+) TGGAG(A/C)CCCCA upstream-variant-2KB, utr-variant-3-prime
rs1002105448 -- 144,529,066(+) GGCCT(C/T)GGGGG intron-variant, downstream-variant-500B, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for C8orf82 Gene

Variant ID Type Subtype PubMed ID
dgv1207n67 CNV gain 20364138
dgv3935n106 CNV deletion 24896259
nsv428208 CNV gain 18775914
nsv522459 CNV loss 19592680
nsv612940 CNV loss 21841781
nsv612951 CNV loss 21841781
nsv831489 CNV loss 17160897

Relevant External Links for C8orf82 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C8orf82

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C8orf82 Gene

Disorders for C8orf82 Gene

Relevant External Links for C8orf82

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C8orf82

No disorders were found for C8orf82 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C8orf82 Gene

Publications for C8orf82 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage. (PMID: 25963833) Drissi R. … Boisvert F.M. (Mol. Cell Proteomics 2015) 3 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. N-terminome analysis of the human mitochondrial proteome. (PMID: 25944712) Vaca Jacome A.S. … Carapito C. (Proteomics 2015) 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for C8orf82 Gene

Sources for C8orf82 Gene

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