Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C8orf49 Gene

Subcategory (RNA class) for C8orf49 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for C8orf49 Gene

  • Chromosome 8 Open Reading Frame 49 2 3
  • GATA4 Downstream Membrane Protein 2 3
  • G4DM 3

External Ids for C8orf49 Gene

ORGUL Members for C8orf49 Gene

Previous GeneCards Identifiers for C8orf49 Gene

  • GC08U900584
  • GC08P011658
  • GC08P011618

Summaries for C8orf49 Gene

GeneCards Summary for C8orf49 Gene

C8orf49 (Chromosome 8 Open Reading Frame 49) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C8orf49 Gene

Genomics for C8orf49 Gene

Regulatory Elements for C8orf49 Gene

Genomic Location for C8orf49 Gene

Start:
11,761,256 bp from pter
End:
11,763,223 bp from pter
Size:
1,968 bases
Orientation:
Plus strand

Genomic View for C8orf49 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C8orf49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C8orf49 Gene

Proteins for C8orf49 Gene

  • Protein details for C8orf49 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96NF6-CH049_HUMAN
    Recommended name:
    Putative uncharacterized protein C8orf49
    Protein Accession:
    Q96NF6
    Secondary Accessions:

    Protein attributes for C8orf49 Gene

    Size:
    230 amino acids
    Molecular mass:
    25558 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C8orf49 Gene

Proteomics data for C8orf49 Gene at MOPED

Post-translational modifications for C8orf49 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C8orf49 Gene

Domains for C8orf49 Gene

Protein Domains for C8orf49 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C8orf49 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C8orf49: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C8orf49 Gene

Function for C8orf49 Gene

Phenotypes for C8orf49 Gene

GenomeRNAi human phenotypes for C8orf49:
genes like me logo Genes that share phenotypes with C8orf49: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C8orf49 Gene

Localization for C8orf49 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C8orf49 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C8orf49 Gene COMPARTMENTS Subcellular localization image for C8orf49 gene
Compartment Confidence
plasma membrane 3
mitochondrion 1

Gene Ontology (GO) - Cellular Components for C8orf49 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C8orf49: view

Pathways for C8orf49 Gene

SuperPathways for C8orf49 Gene

No Data Available

Interacting Proteins for C8orf49 Gene

Gene Ontology (GO) - Biological Process for C8orf49 Gene

None

No data available for Pathways by source for C8orf49 Gene

Transcripts for C8orf49 Gene

mRNA/cDNA for C8orf49 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C8orf49

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for C8orf49
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C8orf49 Gene

No ASD Table

Relevant External Links for C8orf49 Gene

GeneLoc Exon Structure for
C8orf49
ECgene alternative splicing isoforms for
C8orf49

Expression for C8orf49 Gene

mRNA expression in normal human tissues for C8orf49 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C8orf49 Gene

This gene is overexpressed in Ovary (10.2), Heart - Left Ventricle (8.7), Heart - Atrial Appendage (7.6), Pancreas (6.5), Artery - Coronary (5.1), and Stomach (4.8).

SOURCE GeneReport for Unigene cluster for C8orf49 Gene Hs.545529

genes like me logo Genes that share expressions with C8orf49: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for C8orf49 Gene

Orthologs for C8orf49 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C8orf49 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C8orf49 36
  • 92 (a)
OneToOne
Species with no ortholog for C8orf49:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C8orf49 Gene

ENSEMBL:
Gene Tree for C8orf49 (if available)
TreeFam:
Gene Tree for C8orf49 (if available)

Paralogs for C8orf49 Gene

No data available for Paralogs for C8orf49 Gene

Variants for C8orf49 Gene

Sequence variations from dbSNP and Humsavar for C8orf49 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs804285 - 11,761,489(-) ttccc(C/G)agtag nc-transcript-variant
rs804286 -- 11,761,179(-) TTAAA(A/G)GACTT upstream-variant-2KB
rs804287 -- 11,760,802(-) CCTAA(A/G)GAGGT upstream-variant-2KB
rs804288 -- 11,760,670(-) GACAC(A/G)CTTTT upstream-variant-2KB
rs809203 -- 11,761,995(-) AAGGG(A/T)CAGGG nc-transcript-variant

Relevant External Links for C8orf49 Gene

HapMap Linkage Disequilibrium report
C8orf49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C8orf49 Gene

Disorders for C8orf49 Gene

No disorders were found for C8orf49 Gene.

No data available for UniProtKB/Swiss-Prot for C8orf49 Gene

Publications for C8orf49 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Genetic analysis of the promoter region of the GATA4 gene in patients with ventricular septal defects. (PMID: 22500510) Wu G. … Yan B. (Transl Res 2012) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for C8orf49 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate C8orf49
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C8orf49
    • Block miRNA regulation of C8orf49 using miScript Target Protectors

    Sources for C8orf49 Gene

    Back to Top

    Content