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Aliases for C8orf37-AS1 Gene

Subcategory (RNA class) for C8orf37-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C8orf37-AS1 Gene

  • C8orf37 Antisense RNA 1 2 3 5
  • KB-1047C11.2 3
  • Tospeak 3

External Ids for C8orf37-AS1 Gene

Summaries for C8orf37-AS1 Gene

GeneCards Summary for C8orf37-AS1 Gene

C8orf37-AS1 (C8orf37 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C8orf37-AS1 Gene

Genomics for C8orf37-AS1 Gene

Regulatory Elements for C8orf37-AS1 Gene

Enhancers for C8orf37-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G095209 1.5 Ensembl ENCODE dbSUPER 0.4 +7.9 7862 5.3 HDGF PKNOX1 FOXA2 ATF1 SIN3A DMAP1 ZBTB7B TCF12 GATA2 ZNF207 PLEKHF2 TP53INP1 GC08M095215 C8orf37-AS1
GH08G095207 0.8 ENCODE dbSUPER 0.7 +3.9 3863 1.2 ZNF740 MNT HNF4A RXRB PLEKHF2 C8orf37-AS1 GC08M095215
GH08G095181 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -22.6 -22622 1.6 SOX13 ESRRA FOXA2 USF1 CEBPG ZNF644 THRB GATA2 EED NR2F6 PLEKHF2 ENSG00000254248 C8orf37-AS1 GC08P095140
GH08G095215 1 Ensembl dbSUPER 0.4 +10.6 10645 0.2 CTCF CEBPG RAD21 HIC1 ZNF366 SMC3 ZNF207 MAZ ZNF654 MTA2 PLEKHF2 GC08M095215 C8orf37-AS1
GH08G095168 1.3 FANTOM5 ENCODE dbSUPER 0.3 -35.6 -35618 0.4 HDAC1 TAL1 TCF12 FOXM1 NCOR1 TRIM24 SMARCE1 RNF2 MTA2 DPF2 PLEKHF2 GC08P095140 C8orf37-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C8orf37-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for C8orf37-AS1 Gene

Chromosome:
8
Start:
95,204,456 bp from pter
End:
95,810,143 bp from pter
Size:
605,688 bases
Orientation:
Plus strand

Genomic View for C8orf37-AS1 Gene

Genes around C8orf37-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C8orf37-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C8orf37-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C8orf37-AS1 Gene

Proteins for C8orf37-AS1 Gene

Post-translational modifications for C8orf37-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C8orf37-AS1 Gene

Domains & Families for C8orf37-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C8orf37-AS1 Gene

Function for C8orf37-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C8orf37-AS1 Gene

Localization for C8orf37-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C8orf37-AS1 Gene

Pathways & Interactions for C8orf37-AS1 Gene

SuperPathways for C8orf37-AS1 Gene

No Data Available

Interacting Proteins for C8orf37-AS1 Gene

Gene Ontology (GO) - Biological Process for C8orf37-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C8orf37-AS1 Gene

Drugs & Compounds for C8orf37-AS1 Gene

No Compound Related Data Available

Transcripts for C8orf37-AS1 Gene

mRNA/cDNA for C8orf37-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C8orf37-AS1 Gene

No ASD Table

Relevant External Links for C8orf37-AS1 Gene

GeneLoc Exon Structure for
C8orf37-AS1
ECgene alternative splicing isoforms for
C8orf37-AS1

Expression for C8orf37-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C8orf37-AS1 Gene

genes like me logo Genes that share expression patterns with C8orf37-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C8orf37-AS1 Gene

Orthologs for C8orf37-AS1 Gene

Evolution for C8orf37-AS1 Gene

ENSEMBL:
Gene Tree for C8orf37-AS1 (if available)
TreeFam:
Gene Tree for C8orf37-AS1 (if available)

No data available for Orthologs for C8orf37-AS1 Gene

Paralogs for C8orf37-AS1 Gene

No data available for Paralogs for C8orf37-AS1 Gene

Variants for C8orf37-AS1 Gene

Sequence variations from dbSNP and Humsavar for C8orf37-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs36096184 Likely benign 95,269,135(+) GTCAG(A/C/G)TGTGC intron-variant, reference, missense
rs368472866 Uncertain significance 95,269,211(+) TTTTC(C/G/T)CCTCC intron-variant, reference, synonymous-codon, utr-variant-5-prime
rs886063195 Uncertain significance 95,269,194(-) GCGAT(C/T)CAAGA intron-variant, reference, missense, utr-variant-5-prime
rs115853053 Benign 95,269,064(+) TGGTT(C/G)CGGTC intron-variant, reference, synonymous-codon
rs1000004127 -- 95,581,701(+) GTGTG(G/T)ATTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C8orf37-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv249n6 CNV deletion 16902084
dgv7274n100 CNV loss 25217958
esv1524902 CNV insertion 17803354
esv1748335 CNV deletion 17803354
esv1924742 CNV deletion 18987734
esv2436525 CNV deletion 19546169
esv2657689 CNV deletion 23128226
esv2737323 CNV deletion 23290073
esv2737324 CNV deletion 23290073
esv2737325 CNV deletion 23290073
esv2737326 CNV deletion 23290073
esv2737327 CNV deletion 23290073
esv2737328 CNV deletion 23290073
esv2752270 CNV loss 17911159
esv2761450 CNV loss 21179565
esv28209 CNV gain 19812545
esv3303264 CNV mobile element insertion 20981092
esv3306697 CNV mobile element insertion 20981092
esv3308606 CNV mobile element insertion 20981092
esv3309871 CNV mobile element insertion 20981092
esv3343025 CNV insertion 20981092
esv3345537 CNV insertion 20981092
esv3364841 CNV insertion 20981092
esv3371324 CNV insertion 20981092
esv3373190 CNV insertion 20981092
esv3403955 CNV insertion 20981092
esv3414860 CNV insertion 20981092
esv3427079 CNV insertion 20981092
esv3430 CNV loss 18987735
esv3436672 CNV insertion 20981092
esv3437916 CNV insertion 20981092
esv3543875 CNV deletion 23714750
esv3543879 CNV deletion 23714750
esv3543882 CNV deletion 23714750
esv3572912 CNV loss 25503493
esv3618099 CNV loss 21293372
esv3618104 CNV loss 21293372
esv3618105 CNV loss 21293372
esv3618108 CNV loss 21293372
esv3618110 CNV loss 21293372
esv6699 CNV gain 19470904
esv996664 CNV deletion 20482838
nsv1023866 CNV gain 25217958
nsv1075566 CNV deletion 25765185
nsv1075567 CNV deletion 25765185
nsv1117842 CNV deletion 24896259
nsv1121736 CNV deletion 24896259
nsv1129810 CNV tandem duplication 24896259
nsv1142698 CNV deletion 24896259
nsv1147620 CNV deletion 26484159
nsv397435 CNV deletion 16902084
nsv398341 CNV deletion 16902084
nsv465742 CNV loss 19166990
nsv465743 CNV loss 19166990
nsv465744 CNV loss 19166990
nsv475831 CNV novel sequence insertion 20440878
nsv522163 CNV loss 19592680
nsv611760 CNV loss 21841781
nsv611761 CNV loss 21841781
nsv611762 CNV loss 21841781
nsv611763 CNV loss 21841781
nsv6316 CNV insertion 18451855
nsv971338 CNV duplication 23825009
nsv981966 CNV duplication 23825009
nsv981967 CNV duplication 23825009

Relevant External Links for C8orf37-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C8orf37-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C8orf37-AS1 Gene

Disorders for C8orf37-AS1 Gene

Relevant External Links for C8orf37-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C8orf37-AS1

No disorders were found for C8orf37-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C8orf37-AS1 Gene

Publications for C8orf37-AS1 Gene

  1. A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12. (PMID: 23350875) Fernandez-Rozadilla C. … Ruiz-Ponte C. (BMC Genomics 2013) 3 64
  2. Genetic variants associated with disordered eating. (PMID: 23568457) Wade T.D. … Martin N.G. (Int J Eat Disord 2013) 3 64
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64

Products for C8orf37-AS1 Gene

Sources for C8orf37-AS1 Gene

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