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Aliases for C7orf72 Gene

Aliases for C7orf72 Gene

  • Chromosome 7 Open Reading Frame 72 2 3

External Ids for C7orf72 Gene

Summaries for C7orf72 Gene

GeneCards Summary for C7orf72 Gene

C7orf72 (Chromosome 7 Open Reading Frame 72) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C7orf72 Gene

Genomics for C7orf72 Gene

Genomic Location for C7orf72 Gene

Start:
50,096,036 bp from pter
End:
50,159,830 bp from pter
Size:
63,795 bases
Orientation:
Plus strand

Genomic View for C7orf72 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C7orf72 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C7orf72 Gene

No data available for Regulatory Elements for C7orf72 Gene

Proteins for C7orf72 Gene

  • Protein details for C7orf72 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A4D263-CG072_HUMAN
    Recommended name:
    Uncharacterized protein C7orf72
    Protein Accession:
    A4D263
    Secondary Accessions:
    • A6NDX9

    Protein attributes for C7orf72 Gene

    Size:
    438 amino acids
    Molecular mass:
    49672 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C7orf72 Gene

Proteomics data for C7orf72 Gene at MOPED

Post-translational modifications for C7orf72 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C7orf72 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C7orf72 Gene

Domains for C7orf72 Gene

Protein Domains for C7orf72 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C7orf72: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C7orf72 Gene

Function for C7orf72 Gene

Gene Ontology (GO) - Molecular Function for C7orf72 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with C7orf72: view

Phenotypes for C7orf72 Gene

GenomeRNAi human phenotypes for C7orf72:
genes like me logo Genes that share phenotypes with C7orf72: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C7orf72 Gene

Localization for C7orf72 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C7orf72 Gene COMPARTMENTS Subcellular localization image for C7orf72 gene
Compartment Confidence
cytosol 2
nucleus 2
cytoskeleton 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for C7orf72 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with C7orf72: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C7orf72 Gene

Pathways for C7orf72 Gene

SuperPathways for C7orf72 Gene

No Data Available

Interacting Proteins for C7orf72 Gene

Gene Ontology (GO) - Biological Process for C7orf72 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with C7orf72: view

No data available for Pathways by source for C7orf72 Gene

Transcripts for C7orf72 Gene

mRNA/cDNA for C7orf72 Gene

(4) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C7orf72 Gene

Chromosome 7 open reading frame 72:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C7orf72 Gene

No ASD Table

Relevant External Links for C7orf72 Gene

GeneLoc Exon Structure for
C7orf72
ECgene alternative splicing isoforms for
C7orf72

Expression for C7orf72 Gene

mRNA expression in normal human tissues for C7orf72 Gene

mRNA differential expression in normal tissues according to GTEx for C7orf72 Gene

This gene is overexpressed in Testis (36.8) and Brain - Nucleus accumbens (basal ganglia) (4.2).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for C7orf72 Gene

SOURCE GeneReport for Unigene cluster for C7orf72 Gene Hs.99248

genes like me logo Genes that share expressions with C7orf72: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C7orf72 Gene

Orthologs for C7orf72 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C7orf72 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C7H7orf72 35
  • 99.47 (n)
  • 99.54 (a)
C7orf72 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C4H7orf72 35
  • 86.76 (n)
  • 82.19 (a)
C7orf72 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C7orf72 36
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4930415F15Rik 35
  • 80.31 (n)
  • 74.5 (a)
4930415F15Rik 16
4930415F15Rik 36
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C7orf72 36
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C7orf72 36
  • 54 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1309870 35
  • 80.98 (n)
  • 75.84 (a)
chicken
(Gallus gallus)
Aves C2H7orf72 35
  • 62.89 (n)
  • 52.06 (a)
C7orf72 36
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100491044 35
  • 51.72 (n)
  • 39.85 (a)
Species with no ortholog for C7orf72:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C7orf72 Gene

ENSEMBL:
Gene Tree for C7orf72 (if available)
TreeFam:
Gene Tree for C7orf72 (if available)

Paralogs for C7orf72 Gene

No data available for Paralogs for C7orf72 Gene

Variants for C7orf72 Gene

Sequence variations from dbSNP and Humsavar for C7orf72 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs716972 -- 50,120,527(+) CTTAC(A/C)TTCAC intron-variant
rs764249 -- 50,148,427(-) ACGCA(C/G)GCCAT intron-variant
rs764250 -- 50,148,275(-) TCATG(A/G)AAGAT intron-variant
rs878687 -- 50,146,782(-) GGAGA(C/T)GGAGG intron-variant
rs897695 -- 50,146,746(-) CTTTA(A/G)GGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C7orf72 Gene

Variant ID Type Subtype PubMed ID
nsv830997 CNV Gain 17160897
nsv830998 CNV Loss 17160897
esv1003850 CNV Deletion 20482838
esv259459 OTHER Complex 20981092

Relevant External Links for C7orf72 Gene

HapMap Linkage Disequilibrium report
C7orf72

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C7orf72 Gene

Disorders for C7orf72 Gene

Relevant External Links for C7orf72

Genetic Association Database (GAD)
C7orf72
Human Genome Epidemiology (HuGE) Navigator
C7orf72
genes like me logo Genes that share disorders with C7orf72: view

No data available for UniProtKB/Swiss-Prot for C7orf72 Gene

Publications for C7orf72 Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  4. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin E.J. … Vasan R.S. (BMC Med. Genet. 2007) 48
  5. Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. (PMID: 18587394) Barrett J.C. … Daly M.J. (Nat. Genet. 2008) 48

Products for C7orf72 Gene

Sources for C7orf72 Gene

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