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Aliases for C7orf71 Gene

Aliases for C7orf71 Gene

  • Chromosome 7 Open Reading Frame 71 2 3

External Ids for C7orf71 Gene

Previous GeneCards Identifiers for C7orf71 Gene

  • GC07P026645
  • GC07P026558

Summaries for C7orf71 Gene

GeneCards Summary for C7orf71 Gene

C7orf71 (Chromosome 7 Open Reading Frame 71) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C7orf71 Gene

Genomics for C7orf71 Gene

Genomic Location for C7orf71 Gene

Start:
26,637,871 bp from pter
End:
26,647,305 bp from pter
Size:
9,435 bases
Orientation:
Plus strand

Genomic View for C7orf71 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C7orf71 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C7orf71 Gene

No data available for Regulatory Elements for C7orf71 Gene

Proteins for C7orf71 Gene

  • Protein details for C7orf71 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A4D174-CG071_HUMAN
    Recommended name:
    Putative uncharacterized protein C7orf71
    Protein Accession:
    A4D174
    Secondary Accessions:

    Protein attributes for C7orf71 Gene

    Size:
    169 amino acids
    Molecular mass:
    19096 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C7orf71 Gene

Proteomics data for C7orf71 Gene at MOPED

Post-translational modifications for C7orf71 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C7orf71 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C7orf71 Gene

Domains for C7orf71 Gene

Protein Domains for C7orf71 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C7orf71: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C7orf71 Gene

Function for C7orf71 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C7orf71 Gene

Localization for C7orf71 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C7orf71 Gene COMPARTMENTS Subcellular localization image for C7orf71 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C7orf71 Gene

Pathways for C7orf71 Gene

SuperPathways for C7orf71 Gene

No Data Available

Interacting Proteins for C7orf71 Gene

Gene Ontology (GO) - Biological Process for C7orf71 Gene

None

No data available for Pathways by source for C7orf71 Gene

Transcripts for C7orf71 Gene

mRNA/cDNA for C7orf71 Gene

(4) Additional mRNA sequences :
(11) REFSEQ mRNAs :
(11) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C7orf71 Gene

Chromosome 7 open reading frame 71:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for C7orf71

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C7orf71 Gene

No ASD Table

Relevant External Links for C7orf71 Gene

GeneLoc Exon Structure for
C7orf71
ECgene alternative splicing isoforms for
C7orf71

Expression for C7orf71 Gene

mRNA expression in normal human tissues for C7orf71 Gene

mRNA differential expression in normal tissues according to GTEx for C7orf71 Gene

This gene is overexpressed in Testis (37.9).

SOURCE GeneReport for Unigene cluster for C7orf71 Gene Hs.413394

genes like me logo Genes that share expressions with C7orf71: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for C7orf71 Gene

Orthologs for C7orf71 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C7orf71 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C7H7orf71 35
  • 99.41 (n)
  • 99.41 (a)
C7orf71 36
  • 99 (a)
OneToOne
Species with no ortholog for C7orf71:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C7orf71 Gene

ENSEMBL:
Gene Tree for C7orf71 (if available)
TreeFam:
Gene Tree for C7orf71 (if available)

Paralogs for C7orf71 Gene

No data available for Paralogs for C7orf71 Gene

Variants for C7orf71 Gene

Sequence variations from dbSNP and Humsavar for C7orf71 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1015857 -- 26,643,741(-) aagca(A/G)tcagt intron-variant
rs2106904 -- 26,643,764(-) cgtgg(A/G)gattt intron-variant
rs2391305 -- 26,647,798(+) CATTG(C/T)CAGAG downstream-variant-500B
rs6964496 -- 26,641,402(+) ggcac(A/G)gtggc intron-variant
rs6964574 -- 26,641,181(+) atgtc(A/G)tgtac intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C7orf71 Gene

Variant ID Type Subtype PubMed ID
nsv7393 OTHER Inversion 18451855
nsv830929 CNV Gain 17160897
esv2734161 CNV Deletion 23290073
esv268235 CNV Insertion 20981092
esv274317 CNV Insertion 20981092

Relevant External Links for C7orf71 Gene

HapMap Linkage Disequilibrium report
C7orf71

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C7orf71 Gene

Disorders for C7orf71 Gene

No disorders were found for C7orf71 Gene.

No data available for UniProtKB/Swiss-Prot for C7orf71 Gene

Publications for C7orf71 Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Heritability and genetic association analysis of cognition in theA Diabetes Heart Study. (PMID: 24684796) Cox A.J. … Bowden D.W. (Neurobiol. Aging 2014) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Expressed sequence tag analysis of human RPE/choroid for the NEIBank project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G. … Peterson K. (Mol. Vis. 2002) 3

Products for C7orf71 Gene

Sources for C7orf71 Gene

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