C7orf55 Gene
protein-coding GIFtS: 39
GCID: GC07P139024
|
|
chromosome 7 open reading frame 55
| |
Aliases
for C7orf55 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Chromosome 7 Open Reading Frame 551 2 | | FMC11 2 | | HSPC2681 | | Formation Of Mitochondrial Complexes 1 Homolog2 | | UPF0562 Protein C7orf552 |
Export aliases for C7orf55 gene to outside databasesPrevious GC identifers: GC07P138679 GC07P133335 |
Summaries
for C7orf55 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for C7orf55 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000007.13 NC_018918.1 NT_007933.15 NT_079596.2
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the C7orf55 gene promoter:
E2F-4 E2F-3a E2F-5 STAT1 Elk-1 HTF E2F-2 FOXL1 YY1 Nkx6-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for C7orf55
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat C7orf55 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 7q34 Ensembl cytogenetic band: 7q34 HGNC cytogenetic band: 7q34C7orf55 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07P139024: view genomic region
(about GC identifiers)
Start:
|
139,024,203 bp from pter |
End:
|
139,031,065 bp from pter |
Size:
|
6,863 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr7+,CRA_TCAG 138,370,469-138,375,111 |
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Proteins
for C7orf55 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CG055_HUMAN, Q96HJ9 (See
protein sequence)Recommended Name: UPF0562 protein C7orf55 Size: 113 amino acids; 12749 Da
Sequence caution: Sequence=AAF28946.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;Sequence=AAF28946.1; Type=Frameshift; Positions=64;
Secondary accessions: Q75M90 Q9P0B3Explore the universe of human proteins at neXtProt for C7orf55: NX_Q96HJ9
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q96HJ9
C7orf55 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_932068.2
ENSEMBL proteins: ENSP00000297534
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005739 | mitochondrion |
IEA | -- |
C7orf55 for ontologies About GeneDecksing
C7orf55 Antibody Products:
Assay Products for C7orf55: |
Protein
Domains /
Families
for C7orf55 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q96HJ9 UniProtKB/Swiss-Prot: CG055_HUMAN, Q96HJ9Similarity: Belongs to the UPF0562 family |
Function
for C7orf55 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C7orf55 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C7orf55 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C7orf55 |
2 GenomeRNAi human phenotypes for C7orf55:
|
Pathways & Interactions
for C7orf55 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for C7orf55
|
Drugs & Compounds
for C7orf55 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for C7orf55
Search CenterWatch for drugs/clinical trials and news about C7orf55 / CG055
|
Transcripts
for C7orf55 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for C7orf55 gene: NM_197964.4 Unigene Cluster for C7orf55: Chromosome 7 open reading frame 55 Hs.718441 [show with all ESTs]Unigene Representative Sequence: NM_1979645 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000468383 ENST00000481123 ENST00000482181 ENST00000488886 ENST00000297534(uc003vuw.4)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for C7orf55 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for C7orf55 (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: C7orf55 (NM_197964) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for C7orf55 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat C7orf55 |
Additional cDNA sequence: AF161386.1 BC008467.1 NR_073058.1 NR_073059.1 NR_073060.1 6 DOTS entries: DT.115234 DT.86840603 DT.121052391 DT.121052298 DT.92422379 DT.100775072 24/129 AceView cDNA sequences (see all 129): AI273866 AI479418 AI292139 BX116138 BU624349 AI870613 BF446095 BM924406 AI300972 AI208569 AI680820 BM693181 AI094689 BM672187 BQ889014 N73669 AK093018 AI469870 AI306498 AA975941 AI187411 BM668413 AI951379 AI306499
GeneLoc Exon Structure
|
Expression
for C7orf55 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| C7orf55 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GAGAATATCC
About this image
See C7orf55 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for C7orf55
SOURCE GeneReport for Unigene cluster: Hs.718441
SABiosciences Custom PCR Arrays for C7orf55
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for C7orf55
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat C7orf55 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat C7orf55 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat C7orf55 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C7orf55 |
Orthologs
for C7orf55 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for C7orf55 gene from 6/16 species (see all 16) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
1110001J03Rik1 , 5 |
RIKEN cDNA 1110001J03 gene1, 5 |
88.5(n)1
92.92(a)1 |
|
6 (17.84 cM)5
661171 NM_025363.31 NP_079639.11
385335025 |
chicken
(Gallus gallus) |
Aves |
C1H7orf551 |
chromosome 1 open reading frame, human C7orf55 |
71.96(n)
79.44(a) |
|
770530 XM_001233540.2 XP_001233541.2 |
African clawed frog
(Xenopus laevis) |
Amphibia |
Xl.129892 |
Xenopus laevis transcribed sequence with weak similarity to protein refNP_079639.1 (M.musculus) RIKEN cDNA 1110001J03 [Mus musculus] less |
74(n) |
|
BJ094950.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
LOC1003306601 |
UPF0562 protein C7orf55 homolog |
54.74(n)
47.71(a) |
|
100330660 XM_002661013.2 XP_002661059.2 |
fruit fly
(Drosophila melanogaster) |
Insecta |
CG341176 |
-- |
41(a) |
1 ↔ 1 |
3R(5225292-5225771) |
worm
(Caenorhabditis elegans) |
Secernentea |
C29E4.126 |
UPF0562 protein C29E4.12 |
32(a) |
1 ↔ 1 |
III(7940995-7941548) |
ENSEMBL Gene Tree for C7orf55 (if available)
TreeFam Gene Tree for C7orf55 (if available) |
Paralogs
for C7orf55 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for C7orf55 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
| | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing C7orf55 |
|
Disorders
/ Diseases
for C7orf55 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
C7orf55 for disorders About GeneDecksing
2  diseases for C7orf55: About MalaCardsintrahepatic cholangiocarcinoma cholangiocarcinoma
Human Genome Epidemiology (HuGE) Navigator: C7orf55 (1 document)
Export disorders for C7orf55 gene to outside databases
|
Publications
for C7orf55 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for C7orf55 gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with C7orf55) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The DNA sequence of human chromosome 7. (PubMed id 12853948)1, 2 Hillier L.W.... Wilson R.K. (2003)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
- Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624)1 Hendrickson S.L....O'Brien S.J. (2010)
- Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791)1 Wang A.G....Kim N.S. (2006)
- The LIFEdb database in 2006. (PubMed id 16381901)1 Mehrle A....Wiemann S. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336)1 Wiemann S....Poustka A. (2004)
- Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)
|
External Searches for C7orf55 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing C7orf55 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing C7orf55 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing C7orf55 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for C7orf55 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for C7orf55 gene:
Search GeneIP for patents involving C7orf55
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for C7orf55 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| |
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| |  |  |  |  | | | | |
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 | | | C7orf55 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for C7orf55 |
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