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Aliases for C7orf25 Gene

Aliases for C7orf25 Gene

  • Chromosome 7 Open Reading Frame 25 2 3

External Ids for C7orf25 Gene

Summaries for C7orf25 Gene

GeneCards Summary for C7orf25 Gene

C7orf25 (Chromosome 7 Open Reading Frame 25) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C7orf25 Gene

Genomics for C7orf25 Gene

Genomic Location for C7orf25 Gene

Start:
42,908,726 bp from pter
End:
42,912,305 bp from pter
Size:
3,580 bases
Orientation:
Minus strand

Genomic View for C7orf25 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C7orf25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C7orf25 Gene

Regulatory Elements for C7orf25 Gene

Proteins for C7orf25 Gene

  • Protein details for C7orf25 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BPX7-CG025_HUMAN
    Recommended name:
    UPF0415 protein C7orf25
    Protein Accession:
    Q9BPX7
    Secondary Accessions:
    • A4D1V2
    • J3KR36
    • Q9H779

    Protein attributes for C7orf25 Gene

    Size:
    421 amino acids
    Molecular mass:
    46451 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C7orf25 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C7orf25 Gene

Proteomics data for C7orf25 Gene at MOPED

Post-translational modifications for C7orf25 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C7orf25 Gene

No data available for DME Specific Peptides for C7orf25 Gene

Domains for C7orf25 Gene

Protein Domains for C7orf25 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CG025_HUMAN
Family:
  • Belongs to the UPF0415 family.:
    • Q9BPX7
genes like me logo Genes that share domains with C7orf25: view

No data available for Gene Families for C7orf25 Gene

Function for C7orf25 Gene

Gene Ontology (GO) - Molecular Function for C7orf25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C7orf25: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C7orf25 Gene

Localization for C7orf25 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C7orf25 Gene COMPARTMENTS Subcellular localization image for C7orf25 gene
Compartment Confidence
cytosol 3
nucleus 2

No data available for Gene Ontology (GO) - Cellular Components for C7orf25 Gene

Pathways for C7orf25 Gene

SuperPathways for C7orf25 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C7orf25 Gene

None

No data available for Pathways by source for C7orf25 Gene

Transcripts for C7orf25 Gene

Unigene Clusters for C7orf25 Gene

Chromosome 7 open reading frame 25:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C7orf25 Gene

No ASD Table

Relevant External Links for C7orf25 Gene

GeneLoc Exon Structure for
C7orf25
ECgene alternative splicing isoforms for
C7orf25

Expression for C7orf25 Gene

mRNA expression in normal human tissues for C7orf25 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for C7orf25 Gene

SOURCE GeneReport for Unigene cluster for C7orf25 Gene Hs.698120

genes like me logo Genes that share expressions with C7orf25: view

Orthologs for C7orf25 Gene

This gene was present in the common ancestor of animals.

Orthologs for C7orf25 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C7H7orf25 36
  • 99.72 (n)
  • 99.79 (a)
C7orf25 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C4H7orf25 36
  • 91.84 (n)
  • 98.34 (a)
C7orf25 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C18H7orf25 36
  • 93.03 (n)
  • 98.57 (a)
C7orf25 37
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia AW209491 36
  • 88.12 (n)
  • 92.64 (a)
AW209491 16
AW209491 37
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C7orf25 37
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C7orf25 37
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1308147 36
  • 88.36 (n)
  • 91.92 (a)
chicken
(Gallus gallus)
Aves C2H7ORF25 36
  • 74.07 (n)
  • 77.78 (a)
C7orf25 37
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C7orf25 37
  • 79 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.10096 36
tropical clawed frog
(Silurana tropicalis)
Amphibia c7orf25 36
  • 73.73 (n)
  • 80.48 (a)
Str.14994 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5893 36
zebrafish
(Danio rerio)
Actinopterygii C2H7orf25 37
  • 71 (a)
OneToOne
Dr.207 36
zgc:55781 36
  • 66.42 (n)
  • 74.7 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004537 36
  • 45.67 (n)
  • 39.14 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG42553 36
  • 47.82 (n)
  • 40.34 (a)
CG42553 37
  • 37 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F33G12.3 36
  • 43.11 (n)
  • 30.13 (a)
F33G12.3 37
  • 28 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 42 (a)
OneToOne
Species with no ortholog for C7orf25:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C7orf25 Gene

ENSEMBL:
Gene Tree for C7orf25 (if available)
TreeFam:
Gene Tree for C7orf25 (if available)

Paralogs for C7orf25 Gene

No data available for Paralogs for C7orf25 Gene

Variants for C7orf25 Gene

Sequence variations from dbSNP and Humsavar for C7orf25 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs583301 -- 42,908,287(+) CACAC(A/C)AAACT downstream-variant-500B
rs598194 -- 42,909,258(+) CAATA(C/T)AATGA intron-variant, utr-variant-3-prime
rs639459 -- 42,912,337(+) CAGAA(G/T)AAACG upstream-variant-2KB
rs643138 -- 42,911,041(+) GAACC(C/T)GGGCT intron-variant
rs644027 -- 42,911,246(+) ATTCC(C/T)TTATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C7orf25 Gene

Variant ID Type Subtype PubMed ID
nsv830979 CNV Gain 17160897

Relevant External Links for C7orf25 Gene

HapMap Linkage Disequilibrium report
C7orf25

Disorders for C7orf25 Gene

No disorders were found for C7orf25 Gene.

No data available for UniProtKB/Swiss-Prot for C7orf25 Gene

Publications for C7orf25 Gene

  1. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PMID: 8125298) Maruyama K. … Sugano S. (Gene 1994) 3
  2. Missense mutation in the tubulin-specific chaperone E (Tbce) gene in the mouse mutant progressive motor neuronopathy, a model of human motoneuron disease. (PMID: 12446740) Bommel H. … Sendtner M. (J. Cell Biol. 2002) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for C7orf25 Gene

Sources for C7orf25 Gene

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