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Aliases for C7orf25 Gene

Aliases for C7orf25 Gene

  • Chromosome 7 Open Reading Frame 25 2 3 5

External Ids for C7orf25 Gene

Previous GeneCards Identifiers for C7orf25 Gene

  • GC07M042655
  • GC07M042689
  • GC07M042722
  • GC07M042915
  • GC07M042833
  • GC07M042948

Summaries for C7orf25 Gene

GeneCards Summary for C7orf25 Gene

C7orf25 (Chromosome 7 Open Reading Frame 25) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C7orf25 Gene

Genomics for C7orf25 Gene

Regulatory Elements for C7orf25 Gene

Promoters for C7orf25 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C7orf25 on UCSC Golden Path with GeneCards custom track

Genomic Location for C7orf25 Gene

Chromosome:
7
Start:
42,908,726 bp from pter
End:
42,912,305 bp from pter
Size:
3,580 bases
Orientation:
Minus strand

Genomic View for C7orf25 Gene

Genes around C7orf25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C7orf25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C7orf25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C7orf25 Gene

Proteins for C7orf25 Gene

  • Protein details for C7orf25 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BPX7-CG025_HUMAN
    Recommended name:
    UPF0415 protein C7orf25
    Protein Accession:
    Q9BPX7
    Secondary Accessions:
    • A4D1V2
    • J3KR36
    • Q9H779

    Protein attributes for C7orf25 Gene

    Size:
    421 amino acids
    Molecular mass:
    46451 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C7orf25 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C7orf25 Gene

Proteomics data for C7orf25 Gene at MOPED

Post-translational modifications for C7orf25 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C7orf25 Gene

No data available for DME Specific Peptides for C7orf25 Gene

Domains & Families for C7orf25 Gene

Protein Domains for C7orf25 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C7orf25 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BPX7

UniProtKB/Swiss-Prot:

CG025_HUMAN :
  • Belongs to the UPF0415 family.
Family:
  • Belongs to the UPF0415 family.
genes like me logo Genes that share domains with C7orf25: view

No data available for Gene Families for C7orf25 Gene

Function for C7orf25 Gene

Phenotypes for C7orf25 Gene

genes like me logo Genes that share phenotypes with C7orf25: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C7orf25 Gene

Localization for C7orf25 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C7orf25 Gene COMPARTMENTS Subcellular localization image for C7orf25 gene
Compartment Confidence
cytosol 4
nucleus 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C7orf25 Gene

Pathways & Interactions for C7orf25 Gene

SuperPathways for C7orf25 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C7orf25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C7orf25 Gene

Drugs & Compounds for C7orf25 Gene

No Compound Related Data Available

Transcripts for C7orf25 Gene

Unigene Clusters for C7orf25 Gene

Chromosome 7 open reading frame 25:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C7orf25 Gene

No ASD Table

Relevant External Links for C7orf25 Gene

GeneLoc Exon Structure for
C7orf25
ECgene alternative splicing isoforms for
C7orf25

Expression for C7orf25 Gene

mRNA expression in normal human tissues for C7orf25 Gene

Protein differential expression in normal tissues from HIPED for C7orf25 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (36.4), Spleen (7.5), and Skin (6.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for C7orf25 Gene



SOURCE GeneReport for Unigene cluster for C7orf25 Gene Hs.698120

genes like me logo Genes that share expression patterns with C7orf25: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for C7orf25 Gene

Orthologs for C7orf25 Gene

This gene was present in the common ancestor of animals.

Orthologs for C7orf25 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C7orf25 36
  • 100 (a)
OneToOne
C7H7orf25 35
  • 99.72 (n)
  • 99.79 (a)
cow
(Bos Taurus)
Mammalia C4H7orf25 35
  • 91.84 (n)
  • 98.34 (a)
C7orf25 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C7orf25 36
  • 97 (a)
OneToOne
C18H7orf25 35
  • 93.03 (n)
  • 98.57 (a)
mouse
(Mus musculus)
Mammalia AW209491 36
  • 93 (a)
OneToOne
AW209491 16
AW209491 35
  • 88.12 (n)
  • 92.64 (a)
oppossum
(Monodelphis domestica)
Mammalia C7orf25 36
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C7orf25 36
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1308147 35
  • 88.36 (n)
  • 91.92 (a)
chicken
(Gallus gallus)
Aves C2H7ORF25 35
  • 74.07 (n)
  • 77.78 (a)
C7orf25 36
  • 81 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C7orf25 36
  • 79 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.10096 35
tropical clawed frog
(Silurana tropicalis)
Amphibia c7orf25 35
  • 73.73 (n)
  • 80.48 (a)
Str.14994 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5893 35
zebrafish
(Danio rerio)
Actinopterygii C2H7orf25 36
  • 71 (a)
OneToOne
Dr.207 35
zgc:55781 35
  • 66.42 (n)
  • 74.7 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004537 35
  • 45.67 (n)
  • 39.14 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG42553 36
  • 37 (a)
OneToOne
CG42553 35
  • 47.82 (n)
  • 40.34 (a)
worm
(Caenorhabditis elegans)
Secernentea F33G12.3 35
  • 43.11 (n)
  • 30.13 (a)
F33G12.3 36
  • 28 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 42 (a)
OneToOne
Species with no ortholog for C7orf25:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for C7orf25 Gene

ENSEMBL:
Gene Tree for C7orf25 (if available)
TreeFam:
Gene Tree for C7orf25 (if available)

Paralogs for C7orf25 Gene

No data available for Paralogs for C7orf25 Gene

Variants for C7orf25 Gene

Sequence variations from dbSNP and Humsavar for C7orf25 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs3735471 - 42,910,107(+) AGCCT(C/T)CATAG reference, missense
rs643138 -- 42,911,041(+) GAACC(C/T)GGGCT intron-variant, reference, missense
rs1130010 -- 42,909,301(-) TGCAT(C/T)TTGCA utr-variant-3-prime
rs7782253 -- 42,911,774(+) CCACC(A/G)CCAGC intron-variant, utr-variant-5-prime
rs7786568 -- 42,912,417(+) ACTTT(C/G)CACTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C7orf25 Gene

Variant ID Type Subtype PubMed ID
nsv830979 CNV Gain 17160897

Variation tolerance for C7orf25 Gene

Residual Variation Intolerance Score: 21.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.17; 39.30% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C7orf25 Gene

HapMap Linkage Disequilibrium report
C7orf25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C7orf25 Gene

Disorders for C7orf25 Gene

Relevant External Links for C7orf25

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C7orf25

No disorders were found for C7orf25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C7orf25 Gene

Publications for C7orf25 Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 67
  2. MxA interacts with and is modified by the SUMOylation machinery. (PMID: 25447205) Brantis-de-Carvalho C.E. … Valentini S.R. (Exp. Cell Res. 2015) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A. … Wanker E.E. (Sci Signal 2011) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for C7orf25 Gene

Sources for C7orf25 Gene

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