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Aliases for C7orf13 Gene

Subcategory (RNA class) for C7orf13 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for C7orf13 Gene

  • Chromosome 7 Open Reading Frame 13 3
  • MY040 3

External Ids for C7orf13 Gene

Previous GeneCards Identifiers for C7orf13 Gene

  • GC07M154661
  • GC07M155733
  • GC07M155848
  • GC07M155930
  • GC07M156124
  • GC07M156431
  • GC07M150163
  • GC07M156266

Summaries for C7orf13 Gene

GeneCards Summary for C7orf13 Gene

C7orf13 (Chromosome 7 Open Reading Frame 13) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C7orf13 Gene

Genomics for C7orf13 Gene

Regulatory Elements for C7orf13 Gene

Enhancers for C7orf13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F156638 1.3 Ensembl ENCODE 33.4 +0.3 274 3.6 ARNT CREB3L1 WRNIP1 SIN3A YY1 ZNF143 KLF13 SP3 REST ZNF592 C7orf13 RNF32 LINC01006
GH07F156665 0.9 ENCODE 28.4 -26.6 -26581 4.1 PKNOX1 ATF1 ZFP64 ARID4B ZSCAN9 RARA GATA4 FOS CREM HMG20B C7orf13 RNF32 LINC01006 GC07M156670 LOC101927858
GH07F156661 0.7 ENCODE 36 -21.7 -21659 1.0 RNF2 TAL1 DPF2 ARID1B POLR2H JUND KLF16 NCOR1 POLR2A SCRT2 C7orf13 NOM1 LINC01006 RNF32 LOC101927858 GC07M156670
GH07F156663 0.6 ENCODE 32.4 -23.5 -23526 0.6 HLF CEBPB RAD21 ZNF644 HNF1A POLR2A ATF3 CEBPA C7orf13 LINC01006 RNF32 GC07M156670 LOC101927858
GH07F156614 1.6 FANTOM5 Ensembl ENCODE 10 +24.7 24669 4.0 PKNOX1 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 SP5 MXD4 MIER2 LINC01006 RNF32 NOM1 C7orf13 MNX1 GC07P156625 GC07M156563
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C7orf13 on UCSC Golden Path with GeneCards custom track

Promoters for C7orf13 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000315096 53 2399 ARNT CREB3L1 WRNIP1 SIN3A YY1 ZNF143 KLF13 SP3 REST ZNF592

Genomic Location for C7orf13 Gene

Chromosome:
7
Start:
156,638,366 bp from pter
End:
156,640,654 bp from pter
Size:
2,289 bases
Orientation:
Minus strand

Genomic View for C7orf13 Gene

Genes around C7orf13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C7orf13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C7orf13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C7orf13 Gene

Proteins for C7orf13 Gene

  • Protein details for C7orf13 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q9H3I6
    Recommended name:
    Brain my040 protein
    Protein Accession:
    Q9H3I6

    Protein attributes for C7orf13 Gene

    Size:
    88 amino acids
    Molecular mass:
    9541 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C7orf13 Gene

Post-translational modifications for C7orf13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C7orf13 Gene

Domains & Families for C7orf13 Gene

Protein Domains for C7orf13 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C7orf13 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C7orf13: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C7orf13 Gene

Function for C7orf13 Gene

Phenotypes for C7orf13 Gene

GenomeRNAi human phenotypes for C7orf13:
genes like me logo Genes that share phenotypes with C7orf13: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C7orf13 Gene

Localization for C7orf13 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C7orf13 gene
Compartment Confidence
plasma membrane 3
nucleus 2
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for C7orf13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C7orf13: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C7orf13 Gene

Pathways & Interactions for C7orf13 Gene

SuperPathways for C7orf13 Gene

No Data Available

Interacting Proteins for C7orf13 Gene

Gene Ontology (GO) - Biological Process for C7orf13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C7orf13 Gene

Transcripts for C7orf13 Gene

Unigene Clusters for C7orf13 Gene

Chromosome 7 open reading frame 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C7orf13 Gene

No ASD Table

Relevant External Links for C7orf13 Gene

GeneLoc Exon Structure for
C7orf13

Expression for C7orf13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C7orf13 Gene

Protein differential expression in normal tissues from HIPED for C7orf13 Gene

This gene is overexpressed in Testis (28.0), Stomach (10.6), Uterus (6.7), Ovary (6.0), and Lung (6.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for C7orf13 Gene



SOURCE GeneReport for Unigene cluster for C7orf13 Gene:

Hs.647014
genes like me logo Genes that share expression patterns with C7orf13: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C7orf13 Gene

Orthologs for C7orf13 Gene

No data available for Orthologs and Evolution for C7orf13 Gene

Paralogs for C7orf13 Gene

No data available for Paralogs for C7orf13 Gene

Variants for C7orf13 Gene

Sequence variations from dbSNP and Humsavar for C7orf13 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs111457053 -- 156,641,243(+) CACCA(A/G)GACCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs111560888 -- 156,641,034(+) CTGAG(C/G)GGTAC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs111659032 -- 156,641,523(+) TTATA(A/G)AGTGG intron-variant, upstream-variant-2KB
rs111760756 -- 156,640,812(+) TCGAG(C/G)CACGG intron-variant, upstream-variant-2KB, splice-donor-variant, utr-variant-5-prime
rs111763367 -- 156,639,680(+) GGGGC(C/T)AAGAC nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C7orf13 Gene

Variant ID Type Subtype PubMed ID
esv3615671 CNV loss 21293372
nsv1023469 CNV gain 25217958
nsv831198 CNV loss 17160897

Variation tolerance for C7orf13 Gene

Gene Damage Index Score: 8.46; 85.76% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C7orf13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C7orf13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C7orf13 Gene

Disorders for C7orf13 Gene

Relevant External Links for C7orf13

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C7orf13

No disorders were found for C7orf13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C7orf13 Gene

Publications for C7orf13 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 64
  3. A double RING-H2 domain in RNF32, a gene expressed during sperm formation. (PMID: 11890671) van Baren M.J. … Heutink P. (Biochem. Biophys. Res. Commun. 2002) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for C7orf13 Gene

Sources for C7orf13 Gene

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