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Aliases for C6orf7 Gene

Aliases for C6orf7 Gene

  • Chromosome 6 Open Reading Frame 7 2 3
  • C6orf70 6
  • ERMARD 6
  • PVNH6 6

External Ids for C6orf7 Gene

Summaries for C6orf7 Gene

GeneCards Summary for C6orf7 Gene

C6orf7 (Chromosome 6 Open Reading Frame 7) is a Protein Coding gene. Diseases associated with C6orf7 include periventricular nodular heterotopia 6 and periventricular nodular heterotopia.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf7 Gene

Genomics for C6orf7 Gene

Genomic Location for C6orf7 Gene

Start:
79,803,583 bp from pter
End:
79,870,420 bp from pter
Size:
66,838 bases
Orientation:
Minus strand

Genomic View for C6orf7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf7 Gene

No data available for Regulatory Elements for C6orf7 Gene

Proteins for C6orf7 Gene

Post-translational modifications for C6orf7 Gene

No Post-translational modifications

Other Protein References for C6orf7 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C6orf7 Gene

Domains for C6orf7 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for C6orf7 Gene

Function for C6orf7 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C6orf7 Gene

Localization for C6orf7 Gene

No data available for Gene Ontology (GO) - Cellular Components for C6orf7 Gene

Pathways for C6orf7 Gene

SuperPathways for C6orf7 Gene

No Data Available

Interacting Proteins for C6orf7 Gene

Gene Ontology (GO) - Biological Process for C6orf7 Gene

None

No data available for Pathways by source for C6orf7 Gene

Transcripts for C6orf7 Gene

mRNA/cDNA for C6orf7 Gene

(3) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C6orf7 Gene

Chromosome 6 open reading frame 7:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf7 Gene

No ASD Table

Relevant External Links for C6orf7 Gene

GeneLoc Exon Structure for
C6orf7
ECgene alternative splicing isoforms for
C6orf7

Expression for C6orf7 Gene

mRNA expression in normal human tissues for C6orf7 Gene

SOURCE GeneReport for Unigene cluster for C6orf7 Gene Hs.288213

genes like me logo Genes that share expressions with C6orf7: view

Orthologs for C6orf7 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C6orf7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC101057754 36
  • 98.46 (n)
  • 97.22 (a)
Species with no ortholog for C6orf7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C6orf7 Gene

ENSEMBL:
Gene Tree for C6orf7 (if available)
TreeFam:
Gene Tree for C6orf7 (if available)

Paralogs for C6orf7 Gene

No data available for Paralogs for C6orf7 Gene

Variants for C6orf7 Gene

Sequence variations from dbSNP and Humsavar for C6orf7 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs103194 -- 79,860,168(+) TGTAA(C/T)GCAAG intron-variant
rs103195 -- 79,860,270(+) TATAT(A/T)GAACA intron-variant
rs168304 -- 79,853,307(+) gggac(A/G)ctgag intron-variant
rs180834 -- 79,851,963(+) aaaag(C/T)cgtat intron-variant
rs182955 -- 79,862,068(+) CATGC(A/G)TGGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C6orf7 Gene

Variant ID Type Subtype PubMed ID
nsv523718 CNV Loss 19592680
nsv823758 CNV Loss 20364138
esv2669307 CNV Deletion 23128226
esv2732337 CNV Deletion 23290073
nsv516620 CNV Loss 19592680

Relevant External Links for C6orf7 Gene

HapMap Linkage Disequilibrium report
C6orf7

Disorders for C6orf7 Gene

(1) OMIM Diseases for C6orf7 Gene (615532)

genes like me logo Genes that share disorders with C6orf7: view

No data available for UniProtKB/Swiss-Prot for C6orf7 Gene

Publications for C6orf7 Gene

  1. Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study. (PMID: 20522523) KasperaviciAte D. … Sisodiya S.M. (Brain 2010) 3
  2. Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course. (PMID: 23669352) Graff M. … Berndt S.I. (Hum. Mol. Genet. 2013) 3

Products for C6orf7 Gene

Sources for C6orf7 Gene

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