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Aliases for C6orf62 Gene

Aliases for C6orf62 Gene

  • Chromosome 6 Open Reading Frame 62 2 3 5
  • HBV X-Transactivated Gene 12 Protein 3 4
  • HBV XAg-Transactivated Protein 12 3 4
  • HBV X-Transactivated Protein 12 2 3
  • XTP12 3 4
  • Nbla00237 3
  • DJ30M3.2 3

External Ids for C6orf62 Gene

Previous GeneCards Identifiers for C6orf62 Gene

  • GC06M024767
  • GC06M024813
  • GC06M024705

Summaries for C6orf62 Gene

GeneCards Summary for C6orf62 Gene

C6orf62 (Chromosome 6 Open Reading Frame 62) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf62 Gene

Genomics for C6orf62 Gene

Regulatory Elements for C6orf62 Gene

Enhancers for C6orf62 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C6orf62 on UCSC Golden Path with GeneCards custom track

Promoters for C6orf62 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C6orf62 on UCSC Golden Path with GeneCards custom track

Genomic Location for C6orf62 Gene

24,704,861 bp from pter
24,720,836 bp from pter
15,976 bases
Minus strand

Genomic View for C6orf62 Gene

Genes around C6orf62 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C6orf62 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C6orf62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf62 Gene

Proteins for C6orf62 Gene

  • Protein details for C6orf62 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C6orf62
    Protein Accession:
    Secondary Accessions:
    • Q3LIB6
    • Q5JVZ2
    • Q5JVZ3
    • Q6IA63
    • Q9H1Z2

    Protein attributes for C6orf62 Gene

    229 amino acids
    Molecular mass:
    27083 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C6orf62 Gene


neXtProt entry for C6orf62 Gene

Proteomics data for C6orf62 Gene at MOPED

Post-translational modifications for C6orf62 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C6orf62 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C6orf62 Gene

Domains & Families for C6orf62 Gene

Protein Domains for C6orf62 Gene


Suggested Antigen Peptide Sequences for C6orf62 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf62: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf62 Gene

Function for C6orf62 Gene

Phenotypes for C6orf62 Gene

genes like me logo Genes that share phenotypes with C6orf62: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C6orf62 Gene

Localization for C6orf62 Gene

Subcellular locations from

Jensen Localization Image for C6orf62 Gene COMPARTMENTS Subcellular localization image for C6orf62 gene
Compartment Confidence
cytosol 3
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C6orf62 Gene

Pathways & Interactions for C6orf62 Gene

SuperPathways for C6orf62 Gene

No Data Available

Interacting Proteins for C6orf62 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
Selected Interacting proteins: ENSP00000367359 Q9GZU0-CF062_HUMAN for C6orf62 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for C6orf62 Gene


No data available for Pathways by source and SIGNOR curated interactions for C6orf62 Gene

Drugs & Compounds for C6orf62 Gene

No Compound Related Data Available

Transcripts for C6orf62 Gene

mRNA/cDNA for C6orf62 Gene

Unigene Clusters for C6orf62 Gene

Chromosome 6 open reading frame 62:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf62 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c
SP1: -
SP2: - - -
SP3: - -

Relevant External Links for C6orf62 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C6orf62 Gene

mRNA expression in normal human tissues for C6orf62 Gene

Protein differential expression in normal tissues from HIPED for C6orf62 Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C6orf62 Gene

SOURCE GeneReport for Unigene cluster for C6orf62 Gene Hs.744857

genes like me logo Genes that share expression patterns with C6orf62: view

Protein tissue co-expression partners for C6orf62 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C6orf62 Gene

Orthologs for C6orf62 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf62 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia C23H6orf62 35
  • 96.65 (n)
  • 99.13 (a)
C23H6ORF62 36
  • 99 (a)
(Canis familiaris)
Mammalia C35H6orf62 35
  • 98.11 (n)
  • 99.13 (a)
C6orf62 36
  • 99 (a)
(Mus musculus)
Mammalia BC005537 35
  • 96.22 (n)
  • 100 (a)
BC005537 16
BC005537 36
  • 100 (a)
(Pan troglodytes)
Mammalia C6H6orf62 35
  • 99.71 (n)
  • 100 (a)
C6orf62 36
  • 100 (a)
(Monodelphis domestica)
Mammalia C6orf62 36
  • 98 (a)
(Ornithorhynchus anatinus)
Mammalia C6orf62 36
  • 90 (a)
(Gallus gallus)
Aves C2H6ORF62 35
  • 92.43 (n)
  • 97.82 (a)
C6orf62 36
  • 98 (a)
(Anolis carolinensis)
Reptilia C6orf62 36
  • 96 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia c6orf62 35
  • 84.28 (n)
  • 93.01 (a)
Str.7520 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.24169 35
(Danio rerio)
Actinopterygii wufb59h04 35
zgc:111986 35
  • 79.77 (n)
  • 86.46 (a)
C19H6orf62 36
  • 87 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 37 (a)
Species with no ortholog for C6orf62:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C6orf62 Gene

Gene Tree for C6orf62 (if available)
Gene Tree for C6orf62 (if available)

Paralogs for C6orf62 Gene

No data available for Paralogs for C6orf62 Gene

Variants for C6orf62 Gene

Sequence variations from dbSNP and Humsavar for C6orf62 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs34238213 - 24,714,399(+) CGAGG(C/G)CAAAG reference, missense
rs35050510 - 24,714,327(+) ACAGG(C/G)CTAAA reference, missense
rs1065364 -- 24,710,172(-) AGTAT(A/G)ATAAG intron-variant, utr-variant-3-prime
rs5875002 -- 24,719,174(+) AAAAA(-/AA)CTCAC intron-variant, utr-variant-5-prime
rs6456632 -- 24,721,069(+) TGGAG(C/T)CTTTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C6orf62 Gene

Variant ID Type Subtype PubMed ID
nsv515732 CNV Loss 19592680
nsv830609 CNV Gain 17160897

Variation tolerance for C6orf62 Gene

Residual Variation Intolerance Score: 30.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.42; 9.28% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for C6orf62 Gene

Disorders for C6orf62 Gene

Relevant External Links for C6orf62

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C6orf62 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C6orf62 Gene

Publications for C6orf62 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
  4. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for C6orf62 Gene

Sources for C6orf62 Gene