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Aliases for C6orf62 Gene

Aliases for C6orf62 Gene

  • Chromosome 6 Open Reading Frame 62 2 3
  • HBV X-Transactivated Gene 12 Protein 3 4
  • HBV XAg-Transactivated Protein 12 3 4
  • HBV X-Transactivated Protein 12 2 3
  • XTP12 3 4
  • Uncharacterized Protein C6orf62 3
  • Nbla00237 3
  • DJ30M3.2 3

External Ids for C6orf62 Gene

Summaries for C6orf62 Gene

GeneCards Summary for C6orf62 Gene

C6orf62 (Chromosome 6 Open Reading Frame 62) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf62 Gene

Genomics for C6orf62 Gene

Genomic Location for C6orf62 Gene

Start:
24,704,861 bp from pter
End:
24,720,836 bp from pter
Size:
15,976 bases
Orientation:
Minus strand

Genomic View for C6orf62 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf62 Gene

Regulatory Elements for C6orf62 Gene

Proteins for C6orf62 Gene

  • Protein details for C6orf62 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9GZU0-CF062_HUMAN
    Recommended name:
    Uncharacterized protein C6orf62
    Protein Accession:
    Q9GZU0
    Secondary Accessions:
    • Q3LIB6
    • Q5JVZ2
    • Q5JVZ3
    • Q6IA63
    • Q9H1Z2

    Protein attributes for C6orf62 Gene

    Size:
    229 amino acids
    Molecular mass:
    27083 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C6orf62 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C6orf62 Gene

Proteomics data for C6orf62 Gene at MOPED

Post-translational modifications for C6orf62 Gene

No Post-translational modifications

Other Protein References for C6orf62 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C6orf62 Gene

Domains for C6orf62 Gene

Protein Domains for C6orf62 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with C6orf62: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf62 Gene

Function for C6orf62 Gene

Gene Ontology (GO) - Molecular Function for C6orf62 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with C6orf62: view

miRNA for C6orf62 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for C6orf62 Gene

Localization for C6orf62 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf62 Gene COMPARTMENTS Subcellular localization image for C6orf62 gene
Compartment Confidence
nucleus 2
cytosol 1

Gene Ontology (GO) - Cellular Components for C6orf62 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IDA --
genes like me logo Genes that share ontologies with C6orf62: view

Pathways for C6orf62 Gene

SuperPathways for C6orf62 Gene

No Data Available

Interacting Proteins for C6orf62 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000367359%0d%0a9606.ENSP00000385269%0d%0a9606.ENSP00000377411%0d%0a
Selected Interacting proteins: ENSP00000367359 Q9GZU0-CF062_HUMAN for C6orf62 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for C6orf62 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with C6orf62: view

No data available for Pathways by source for C6orf62 Gene

Transcripts for C6orf62 Gene

mRNA/cDNA for C6orf62 Gene

Unigene Clusters for C6orf62 Gene

Chromosome 6 open reading frame 62:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf62 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c
SP1: -
SP2: - - -
SP3: - -
SP4:

Relevant External Links for C6orf62 Gene

GeneLoc Exon Structure for
C6orf62
ECgene alternative splicing isoforms for
C6orf62

Expression for C6orf62 Gene

mRNA expression in normal human tissues for C6orf62 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C6orf62 Gene

SOURCE GeneReport for Unigene cluster for C6orf62 Gene Hs.744857

genes like me logo Genes that share expressions with C6orf62: view

Orthologs for C6orf62 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf62 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf62 36
  • 99.71 (n)
  • 100 (a)
C6orf62 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C23H6orf62 36
  • 96.65 (n)
  • 99.13 (a)
C23H6ORF62 37
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C35H6orf62 36
  • 98.11 (n)
  • 99.13 (a)
C6orf62 37
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia BC005537 36
  • 96.22 (n)
  • 100 (a)
BC005537 16
BC005537 37
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C6orf62 37
  • 98 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C6orf62 37
  • 90 (a)
OneToOne
chicken
(Gallus gallus)
Aves C2H6ORF62 36
  • 92.43 (n)
  • 97.82 (a)
C6orf62 37
  • 98 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C6orf62 37
  • 96 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.24169 36
tropical clawed frog
(Silurana tropicalis)
Amphibia c6orf62 36
  • 84.28 (n)
  • 93.01 (a)
Str.7520 36
zebrafish
(Danio rerio)
Actinopterygii C19H6orf62 37
  • 87 (a)
OneToOne
wufb59h04 36
zgc:111986 36
  • 79.77 (n)
  • 86.46 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 37 (a)
OneToOne
Species with no ortholog for C6orf62:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C6orf62 Gene

ENSEMBL:
Gene Tree for C6orf62 (if available)
TreeFam:
Gene Tree for C6orf62 (if available)

Paralogs for C6orf62 Gene

No data available for Paralogs for C6orf62 Gene

Variants for C6orf62 Gene

Sequence variations from dbSNP and Humsavar for C6orf62 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs765605 -- 24,709,510(-) ttata(G/T)atgag intron-variant, utr-variant-3-prime
rs1065364 -- 24,710,172(-) AGTAT(A/G)ATAAG intron-variant, utr-variant-3-prime
rs1923186 -- 24,721,356(+) GCGCG(G/T)GACAG upstream-variant-2KB
rs1923187 -- 24,721,439(+) AAAGA(A/T)GGAAA upstream-variant-2KB
rs2294684 -- 24,709,066(-) GTGAT(A/G)TTATT intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for C6orf62 Gene

Variant ID Type Subtype PubMed ID
nsv515732 CNV Loss 19592680
nsv830609 CNV Gain 17160897

Relevant External Links for C6orf62 Gene

HapMap Linkage Disequilibrium report
C6orf62

Disorders for C6orf62 Gene

Relevant External Links for C6orf62

Genetic Association Database (GAD)
C6orf62
genes like me logo Genes that share disorders with C6orf62: view

No data available for UniProtKB/Swiss-Prot for C6orf62 Gene

Publications for C6orf62 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3

Products for C6orf62 Gene

Sources for C6orf62 Gene

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