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Aliases for C6orf47 Gene

Aliases for C6orf47 Gene

  • Chromosome 6 Open Reading Frame 47 2 3 5
  • Protein G4 3 4
  • G4 3 4
  • Uncharacterized Protein C6orf47 3
  • D6S53E 3
  • NG34 3

External Ids for C6orf47 Gene

Previous GeneCards Identifiers for C6orf47 Gene

  • GC06M031689
  • GC06M031396
  • GC06M031730
  • GC06M031735
  • GC06M031627
  • GC06M031630
  • GC06M031634
  • GC06M031637
  • GC06M031641
  • GC06M031646
  • GC06M031650
  • GC06M031685
  • GC06M031663
  • GC06M031674
  • GC06M031723
  • GC06M031792

Summaries for C6orf47 Gene

GeneCards Summary for C6orf47 Gene

C6orf47 (Chromosome 6 Open Reading Frame 47) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf47 Gene

Genomics for C6orf47 Gene

Regulatory Elements for C6orf47 Gene

Enhancers for C6orf47 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F031567 1.3 FANTOM5 Ensembl ENCODE 39.1 +82.5 82502 22.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF548 DDX39B TNF LY6G5B DHX16 ATF6B LSM2 MICA TCF19 C6orf47 PPT2
GH06F031829 0.2 ENCODE 21.4 -173.4 -173385 9.1 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MEF2D GLIS1 ATF6B LSM2 LY6G5B DDX39B SKIV2L DXO GTF2H4 VARS LY6G6C CSNK2B
GH06F031538 0.6 ENCODE 20 +119.6 119634 4.9 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF263 MCM3 SP3 TBX21 DDX39B LY6G5B ATF6B DHX16 PPP1R10 LSM2 SKIV2L RPL3P2 TCF19 ABCF1
GH06F030776 1.5 FANTOM5 Ensembl ENCODE 19.4 +877.5 877472 13.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 IER3 PPP1R10 PAIP1P1 DHX16 LY6G5B GTF2H4 ABCF1 DDX39B VARS2 HCG18
GH06F030907 1 ENCODE 19.4 +752.3 752315 2.2 CREB3L1 YBX1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 NFYC HCG18 GTF2H4 DDX39B LY6G5B DHX16 ABCF1 VARS2 LSM2 PPP1R10 NFKBIL1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around C6orf47 on UCSC Golden Path with GeneCards custom track

Promoters for C6orf47 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001879781 372 1601 HDGF ARID4B SIN3A DMAP1 SLC30A9 KLF13 DEK ZNF263 SP3 SP5

Genomic Location for C6orf47 Gene

Chromosome:
6
Start:
31,658,298 bp from pter
End:
31,660,772 bp from pter
Size:
2,475 bases
Orientation:
Minus strand

Genomic View for C6orf47 Gene

Genes around C6orf47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C6orf47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C6orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for C6orf47 Gene

  • Protein details for C6orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95873-CF047_HUMAN
    Recommended name:
    Uncharacterized protein C6orf47
    Protein Accession:
    O95873
    Secondary Accessions:
    • B0UXA1
    • B0UZ50
    • Q5SSS6
    • Q95IG0

    Protein attributes for C6orf47 Gene

    Size:
    294 amino acids
    Molecular mass:
    31710 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C6orf47 Gene

Post-translational modifications for C6orf47 Gene

  • Ubiquitination at Lys 147 and Lys 153
  • Modification sites at PhosphoSitePlus

Other Protein References for C6orf47 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C6orf47 Gene

Domains & Families for C6orf47 Gene

Protein Domains for C6orf47 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C6orf47 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf47: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf47 Gene

Function for C6orf47 Gene

Phenotypes for C6orf47 Gene

GenomeRNAi human phenotypes for C6orf47:
genes like me logo Genes that share phenotypes with C6orf47: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C6orf47 Gene

Localization for C6orf47 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf47 Gene COMPARTMENTS Subcellular localization image for C6orf47 gene
Compartment Confidence
plasma membrane 3
mitochondrion 2
cytosol 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for C6orf47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with C6orf47: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C6orf47 Gene

Pathways & Interactions for C6orf47 Gene

SuperPathways for C6orf47 Gene

No Data Available

Interacting Proteins for C6orf47 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000365076%0d%0a9606.ENSP00000339824%0d%0a
Selected Interacting proteins: ENSP00000365076 O95873-CF047_HUMAN for C6orf47 Gene via STRING IID

Gene Ontology (GO) - Biological Process for C6orf47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C6orf47 Gene

Transcripts for C6orf47 Gene

mRNA/cDNA for C6orf47 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(94) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C6orf47 Gene

Chromosome 6 open reading frame 47:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf47 Gene

No ASD Table

Relevant External Links for C6orf47 Gene

GeneLoc Exon Structure for
C6orf47
ECgene alternative splicing isoforms for
C6orf47

Expression for C6orf47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C6orf47 Gene

Protein differential expression in normal tissues from HIPED for C6orf47 Gene

This gene is overexpressed in Colon (18.7), Urinary Bladder (17.4), Ovary (9.2), and Pancreas (7.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C6orf47 Gene



NURSA nuclear receptor signaling pathways regulating expression of C6orf47 Gene:

C6orf47

SOURCE GeneReport for Unigene cluster for C6orf47 Gene:

Hs.247323
genes like me logo Genes that share expression patterns with C6orf47: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for C6orf47 Gene

Orthologs for C6orf47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf47 34
  • 99.21 (n)
dog
(Canis familiaris)
Mammalia C12H6orf47 34
  • 85.05 (n)
cow
(Bos Taurus)
Mammalia C23H6orf47 34
  • 83.5 (n)
C23H6ORF47 35
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia D17H6S53E 34 16 35
  • 79.29 (n)
rat
(Rattus norvegicus)
Mammalia G4 34
  • 78.84 (n)
oppossum
(Monodelphis domestica)
Mammalia C6orf47 35
  • 53 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii C19H6orf47 35
  • 23 (a)
OneToOne
Species where no ortholog for C6orf47 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C6orf47 Gene

ENSEMBL:
Gene Tree for C6orf47 (if available)
TreeFam:
Gene Tree for C6orf47 (if available)

Paralogs for C6orf47 Gene

No data available for Paralogs for C6orf47 Gene

Variants for C6orf47 Gene

Sequence variations from dbSNP and Humsavar for C6orf47 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1062309 -- 31,662,218(-) TTGGG(C/T)CTCTG upstream-variant-2KB, utr-variant-3-prime
rs112276942 -- 31,661,843(+) TAGTC(A/T)GGGAA downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs113102746 -- 31,661,594(+) ACTGG(C/G)GAGGC downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs113391307 -- 31,661,296(+) AAGTG(G/T)ACAAG upstream-variant-2KB, utr-variant-3-prime
rs113571875 -- 31,662,509(+) CCCCG(G/T)GGTCC upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for C6orf47 Gene

Variant ID Type Subtype PubMed ID
dgv10403n54 CNV loss 21841781
dgv10404n54 CNV loss 21841781
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv1161370 CNV deletion 26073780
nsv462871 CNV loss 19166990
nsv601942 CNV loss 21841781
nsv830627 CNV loss 17160897

Variation tolerance for C6orf47 Gene

Residual Variation Intolerance Score: 78.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.32; 76.65% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C6orf47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C6orf47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf47 Gene

Disorders for C6orf47 Gene

Relevant External Links for C6orf47

Genetic Association Database (GAD)
C6orf47
Human Genome Epidemiology (HuGE) Navigator
C6orf47
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C6orf47

No disorders were found for C6orf47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C6orf47 Gene

Publications for C6orf47 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  3. Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse. (PMID: 14656967) Xie T. … Hood L. (Genome Res. 2003) 3 4 64
  4. Identification of multiple HTF-island associated genes in the human major histocompatibility complex class III region. (PMID: 2477242) Sargent C.A. … Campbell R.D. (EMBO J. 1989) 2 3 64
  5. Toward a comprehensive characterization of a human cancer cell phosphoproteome. (PMID: 23186163) Zhou H. … Mohammed S. (J. Proteome Res. 2013) 4 64

Products for C6orf47 Gene

Sources for C6orf47 Gene

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