Aliases for C6orf229 Gene
External Ids for C6orf229 Gene
- HGNC: 49394
- Entrez Gene: 101928603
- Ensembl: ENSG00000260286
- UniProtKB: H3BNL8
Summaries for C6orf229 Gene
GeneCards Summary for C6orf229 Gene
C6orf229 (Chromosome 6 Open Reading Frame 229) is a Protein Coding gene. GO annotations related to this gene include binding.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf229 Gene
Genomics for C6orf229 Gene
Regulatory Elements for C6orf229 Gene
Enhancers for C6orf229 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH06G024803 | 0.8 | ENCODE | 0.7 | -4.7 | -4692 | 0.2 | SOX13 FOXA2 ATF1 SAP130 ZMYM3 ZNF384 DNMT3B RARA TEAD3 FOS | RIPOR2 C6orf229 ENSG00000282804 |
| GH06G024799 | 0.8 | FANTOM5 | 0.7 | -0.9 | -885 | 0.4 | SOX13 ESRRA TFE3 PKNOX1 TEAD1 NFIA SAP130 NR2F1 RARA TGIF2 | GMNN ALDH5A1 DCDC2 GPLD1 C6orf229 ENSG00000282804 |
| GH06G024802 | 0.7 | ENCODE | 0.7 | -4.0 | -4011 | 0.4 | SOX13 ATF1 ZMYM3 CEBPG ZNF384 RARA TEAD3 SCRT2 CREM THAP11 | C6orf62 C6orf229 ENSG00000282804 |
| GH06G024773 | 1.2 | ENCODE | 0.3 | +22.8 | 22833 | 4.8 | CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF263 SP3 | ENSG00000272402 GMNN C6orf229 |
| GH06G024778 | 0.9 | ENCODE | 0.4 | +19.4 | 19418 | 1.3 | ELF3 TBP FOXA2 MLX ARID4B RAD21 YY1 RARA FOS RELB | C6orf62 GMNN C6orf229 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around C6orf229 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for C6orf229 Gene
- Chromosome:
- 6
- Start:
- 24,797,321 bp from pter
- End:
- 24,798,896 bp from pter
- Size:
- 1,576 bases
- Orientation:
- Minus strand
Genomic View for C6orf229 Gene
Genes around C6orf229 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p22.3 by Ensembl
- 6p22.3 by Entrez Gene
- 6p22.3 by HGNC
C6orf229 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C6orf229 Gene
Proteins for C6orf229 Gene
-
Protein details for C6orf229 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- H3BNL8-CF229_HUMAN
- Recommended name:
- Uncharacterized protein C6orf229
- Protein Accession:
- H3BNL8
Protein attributes for C6orf229 Gene
- Size:
- 230 amino acids
- Molecular mass:
- 26547 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for C6orf229 Gene
No Post-translational modifications
Other Protein References for C6orf229 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Search GeneTex for Antibodies for C6orf229
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for C6orf229
- Origene Custom Protein Services for C6orf229
- Search GeneTex for Proteins for C6orf229
Assay Products
No data available for DME Specific Peptides for C6orf229 Gene
Domains & Families for C6orf229 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C6orf229 Gene
Function for C6orf229 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for C6orf229
-
- Search ViGene Biosciences for C6orf229
CRISPR Products
- Browse CRISPR knockouts for C6orf229
miRNA Products
- Search ViGene Biosciences for C6orf229
Inhibitory RNA Products
- Search ViGene Biosciences for C6orf229
Clone Products
- VectorBuilder custom plasmid, inducible vectors for C6orf229
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf229
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C6orf229 Gene
Localization for C6orf229 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C6orf229 Gene
Transcripts for C6orf229 Gene
mRNA/cDNA for C6orf229 Gene
- (1) REFSEQ mRNAs :
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for C6orf229
miRNA Products
- Search ViGene Biosciences for C6orf229
Inhibitory RNA Products
- Search ViGene Biosciences for C6orf229
Clone Products
- VectorBuilder custom plasmid, inducible vectors for C6orf229
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf229
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for C6orf229 Gene
mRNA differential expression in normal tissues according to GTEx for C6orf229 Gene
This gene is overexpressed in Testis (x32.3) and Whole Blood (x12.4).
NURSA nuclear receptor signaling pathways regulating expression of C6orf229 Gene:
C6orf229Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C6orf229 Gene
Orthologs for C6orf229 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | LOC101057982 34 |
|
||
| dog (Canis familiaris) |
Mammalia | LOC102152999 34 |
|
||
| C6orf229 35 |
|
OneToOne | |||
| cow (Bos Taurus) |
Mammalia | LOC101904023 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC102548126 34 |
|
||
| mouse (Mus musculus) |
Mammalia | 1700016G14Rik 34 16 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | C6orf229 35 |
|
OneToOne | |
| lizard (Anolis carolinensis) |
Reptilia | C6orf229 35 |
|
OneToOne |
- Species where no ortholog for C6orf229 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for C6orf229 Gene
No data available for Paralogs for C6orf229 Gene
Variants for C6orf229 Gene
| SNP ID | Clin | Chr 06 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000866145 | -- | 24,799,807(+) | CAGCT(G/T)CTAAG | upstream-variant-2KB | |
| rs1000918408 | -- | 24,800,312(+) | ACCCA(C/T)ATGCT | upstream-variant-2KB | |
| rs1001420887 | -- | 24,796,913(+) | AAAAG(C/T)AGTCT | downstream-variant-500B | |
| rs1003311780 | -- | 24,799,236(+) | TGCTT(G/T)TTTGC | upstream-variant-2KB | |
| rs1004439993 | -- | 24,797,988(+) | CCCAC(A/G)CTGCT | intron-variant |
Gene Damage Index Score:
5.34;
70.75% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for C6orf229 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- C6orf229
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf229 Gene
Disorders for C6orf229 Gene
Relevant External Links for C6orf229
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- C6orf229
No disorders were found for C6orf229 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C6orf229 Gene
Publications for C6orf229 Gene
- The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4 64
Products for C6orf229 Gene
- Browse R&D Systems for Antibodies
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- Browse Primary Antibodies
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- Browse ELISAs
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- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for C6orf229
- VectorBuilder custom plasmid, inducible vectors for C6orf229
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf229
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for C6orf229 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
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- (122) diseasecard
- (123) NIH Rare Diseases
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- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
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- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer