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Aliases for C6orf226 Gene

Aliases for C6orf226 Gene

  • Chromosome 6 Open Reading Frame 226 2 3

External Ids for C6orf226 Gene

Summaries for C6orf226 Gene

GeneCards Summary for C6orf226 Gene

C6orf226 (Chromosome 6 Open Reading Frame 226) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf226 Gene

Genomics for C6orf226 Gene

Genomic Location for C6orf226 Gene

Start:
42,890,265 bp from pter
End:
42,890,816 bp from pter
Size:
552 bases
Orientation:
Minus strand

Genomic View for C6orf226 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf226 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf226 Gene

Regulatory Elements for C6orf226 Gene

Proteins for C6orf226 Gene

  • Protein details for C6orf226 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5I0X4-CF226_HUMAN
    Recommended name:
    Uncharacterized protein C6orf226
    Protein Accession:
    Q5I0X4
    Secondary Accessions:

    Protein attributes for C6orf226 Gene

    Size:
    101 amino acids
    Molecular mass:
    10566 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C6orf226 Gene

Proteomics data for C6orf226 Gene at MOPED

Post-translational modifications for C6orf226 Gene

No Post-translational modifications

Other Protein References for C6orf226 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C6orf226 Gene

Domains for C6orf226 Gene

Protein Domains for C6orf226 Gene

ProtoNet:
genes like me logo Genes that share domains with C6orf226: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf226 Gene

Function for C6orf226 Gene

Gene Ontology (GO) - Molecular Function for C6orf226 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C6orf226: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C6orf226 Gene

Localization for C6orf226 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf226 Gene COMPARTMENTS Subcellular localization image for C6orf226 gene
Compartment Confidence
extracellular 3
cytosol 1
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for C6orf226 Gene

Pathways for C6orf226 Gene

SuperPathways for C6orf226 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C6orf226 Gene

None

No data available for Pathways by source for C6orf226 Gene

Transcripts for C6orf226 Gene

mRNA/cDNA for C6orf226 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(37) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C6orf226 Gene

Chromosome 6 open reading frame 226:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf226 Gene

No ASD Table

Relevant External Links for C6orf226 Gene

GeneLoc Exon Structure for
C6orf226
ECgene alternative splicing isoforms for
C6orf226

Expression for C6orf226 Gene

mRNA expression in normal human tissues for C6orf226 Gene

SOURCE GeneReport for Unigene cluster for C6orf226 Gene Hs.571098

genes like me logo Genes that share expressions with C6orf226: view

Orthologs for C6orf226 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for C6orf226 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf226 36
  • 96.97 (n)
  • 94.95 (a)
C6orf226 37
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 2310039H08Rik 16
2310039H08Rik 37
  • 46 (a)
OneToOne
Species with no ortholog for C6orf226:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C6orf226 Gene

ENSEMBL:
Gene Tree for C6orf226 (if available)
TreeFam:
Gene Tree for C6orf226 (if available)

Paralogs for C6orf226 Gene

No data available for Paralogs for C6orf226 Gene

Variants for C6orf226 Gene

Sequence variations from dbSNP and Humsavar for C6orf226 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs731068 -- 42,891,018(+) CCAAA(A/G)AAGAA upstream-variant-2KB
rs1819323 -- 42,891,951(+) gaacc(C/T)gggag upstream-variant-2KB
rs1819324 -- 42,891,985(+) ttgca(C/G)cactg upstream-variant-2KB
rs1819325 -- 42,892,010(+) tgaca(A/C)agcaa upstream-variant-2KB
rs2395940 -- 42,892,729(+) GAGGT(C/G)GGTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for C6orf226 Gene

Variant ID Type Subtype PubMed ID
nsv830651 CNV Loss 17160897

Relevant External Links for C6orf226 Gene

HapMap Linkage Disequilibrium report
C6orf226

Disorders for C6orf226 Gene

No disorders were found for C6orf226 Gene.

No data available for UniProtKB/Swiss-Prot for C6orf226 Gene

Publications for C6orf226 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C6orf226 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate C6orf226
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for C6orf226
    • Block miRNA regulation of C6orf226 using miScript Target Protectors

    Sources for C6orf226 Gene

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