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Aliases for C6orf203 Gene

Aliases for C6orf203 Gene

  • Chromosome 6 Open Reading Frame 203 2 3 5
  • HSPC230 3
  • PRED31 3

External Ids for C6orf203 Gene

Previous GeneCards Identifiers for C6orf203 Gene

  • GC06P107349
  • GC06P107394
  • GC06P107456
  • GC06P104921

Summaries for C6orf203 Gene

GeneCards Summary for C6orf203 Gene

C6orf203 (Chromosome 6 Open Reading Frame 203) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf203 Gene

Genomics for C6orf203 Gene

Regulatory Elements for C6orf203 Gene

Enhancers for C6orf203 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around C6orf203 on UCSC Golden Path with GeneCards custom track

Promoters for C6orf203 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around C6orf203 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the C6orf203 gene promoter:

Genomic Location for C6orf203 Gene

Chromosome:
6
Start:
107,028,172 bp from pter
End:
107,051,586 bp from pter
Size:
23,415 bases
Orientation:
Plus strand

Genomic View for C6orf203 Gene

Genes around C6orf203 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C6orf203 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C6orf203 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf203 Gene

Proteins for C6orf203 Gene

  • Protein details for C6orf203 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P0P8-CF203_HUMAN
    Recommended name:
    Uncharacterized protein C6orf203
    Protein Accession:
    Q9P0P8
    Secondary Accessions:
    • B3KRG9

    Protein attributes for C6orf203 Gene

    Size:
    240 amino acids
    Molecular mass:
    27941 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C6orf203 Gene

Proteomics data for C6orf203 Gene at MOPED

Post-translational modifications for C6orf203 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C6orf203 Gene

No data available for DME Specific Peptides for C6orf203 Gene

Domains & Families for C6orf203 Gene

Protein Domains for C6orf203 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf203: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C6orf203 Gene

Function for C6orf203 Gene

Phenotypes for C6orf203 Gene

genes like me logo Genes that share phenotypes with C6orf203: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C6orf203 Gene

Localization for C6orf203 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf203 Gene COMPARTMENTS Subcellular localization image for C6orf203 gene
Compartment Confidence
mitochondrion 5
extracellular 2
cytosol 1
endoplasmic reticulum 1
golgi apparatus 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C6orf203 Gene

Pathways & Interactions for C6orf203 Gene

SuperPathways for C6orf203 Gene

No Data Available

Interacting Proteins for C6orf203 Gene

Gene Ontology (GO) - Biological Process for C6orf203 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C6orf203 Gene

Drugs & Compounds for C6orf203 Gene

No Compound Related Data Available

Transcripts for C6orf203 Gene

Unigene Clusters for C6orf203 Gene

Chromosome 6 open reading frame 203:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf203 Gene

No ASD Table

Relevant External Links for C6orf203 Gene

GeneLoc Exon Structure for
C6orf203
ECgene alternative splicing isoforms for
C6orf203

Expression for C6orf203 Gene

mRNA expression in normal human tissues for C6orf203 Gene

Protein differential expression in normal tissues from HIPED for C6orf203 Gene

This gene is overexpressed in Lung (7.6) and Peripheral blood mononuclear cells (7.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for C6orf203 Gene



SOURCE GeneReport for Unigene cluster for C6orf203 Gene Hs.486084

genes like me logo Genes that share expression patterns with C6orf203: view

Protein tissue co-expression partners for C6orf203 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C6orf203 Gene

Orthologs for C6orf203 Gene

This gene was present in the common ancestor of animals.

Orthologs for C6orf203 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia C12H6orf203 35
  • 86.19 (n)
  • 80.75 (a)
C6orf203 36
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700021F05Rik 35
  • 80.61 (n)
  • 79.5 (a)
1700021F05Rik 16
1700021F05Rik 36
  • 79 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf203 35
  • 99.45 (n)
  • 99.59 (a)
C6orf203 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC683897 35
  • 79.78 (n)
  • 78.24 (a)
cow
(Bos Taurus)
Mammalia C9H6ORF203 36
  • 67 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C6orf203 36
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C6orf203 36
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves C3H6ORF203 35
  • 66.22 (n)
  • 58.11 (a)
C3H6ORF203 36
  • 55 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C6orf203 36
  • 51 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c6orf203 35
  • 56.48 (n)
  • 50.93 (a)
Str.16694 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.19228 35
zebrafish
(Danio rerio)
Actinopterygii C13H6orf203 36
  • 40 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG4884 36
  • 30 (a)
OneToOne
Species with no ortholog for C6orf203:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C6orf203 Gene

ENSEMBL:
Gene Tree for C6orf203 (if available)
TreeFam:
Gene Tree for C6orf203 (if available)

Paralogs for C6orf203 Gene

Pseudogenes.org Pseudogenes for C6orf203 Gene

genes like me logo Genes that share paralogs with C6orf203: view

No data available for Paralogs for C6orf203 Gene

Variants for C6orf203 Gene

Sequence variations from dbSNP and Humsavar for C6orf203 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs4946807 -- 107,043,191(+) TACCC(A/G)GGCGT intron-variant
rs6899400 -- 107,050,986(+) ACTCA(A/G)AGCAG intron-variant
rs9486498 -- 107,026,564(+) taagt(A/C)tgggg upstream-variant-2KB
rs9486499 -- 107,030,089(+) gccca(G/T)attag intron-variant, utr-variant-5-prime
rs9486501 -- 107,033,540(+) AGggc(C/T)gggca intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C6orf203 Gene

Variant ID Type Subtype PubMed ID
esv2732546 CNV Deletion 23290073
nsv508425 CNV Loss 20534489
nsv509145 CNV Insertion 20534489
nsv510909 CNV Complex 20534489
dgv87n68 CNV Loss 17160897
nsv5431 CNV Insertion 18451855

Variation tolerance for C6orf203 Gene

Residual Variation Intolerance Score: 73.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.15; 23.22% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C6orf203 Gene

HapMap Linkage Disequilibrium report
C6orf203

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf203 Gene

Disorders for C6orf203 Gene

Relevant External Links for C6orf203

Human Genome Epidemiology (HuGE) Navigator
C6orf203
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
C6orf203

No disorders were found for C6orf203 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C6orf203 Gene

Publications for C6orf203 Gene

  1. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3 4 67
  2. From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. (PMID: 11707072) Reymond A. … Antonarakis S.E. (Genomics 2001) 2 3
  3. Phosphoproteome analysis of functional mitochondria isolated from resting human muscle reveals extensive phosphorylation of inner membrane protein complexes and enzymes. (PMID: 20833797) Zhao X. … Jensen O.N. (Mol. Cell Proteomics 2011) 3
  4. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  5. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3

Products for C6orf203 Gene

Sources for C6orf203 Gene

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