Aliases for C6orf203 Gene
Aliases for C6orf203 Gene
External Ids for C6orf203 Gene
- HGNC: 17971
- Entrez Gene: 51250
- Ensembl: ENSG00000130349
- UniProtKB: Q9P0P8
Previous GeneCards Identifiers for C6orf203 Gene
- GC06P107349
- GC06P107394
- GC06P107456
- GC06P104921
Summaries for C6orf203 Gene
GeneCards Summary for C6orf203 Gene
C6orf203 (Chromosome 6 Open Reading Frame 203) is a Protein Coding gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf203 Gene
Genomics for C6orf203 Gene
Regulatory Elements for C6orf203 Gene
Enhancers for C6orf203 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH06G107060 | 0.8 | Ensembl ENCODE | 12.1 | +33.4 | 33354 | 1.4 | SOX13 ZNF316 IKZF1 MAFK | C6orf203 PIR49317 |
| GH06G106997 | 0.8 | ENCODE | 12 | -30.1 | -30054 | 1.9 | CTCF ZNF792 RB1 SAP130 ZSCAN4 ZNF644 ZNF2 ZNF48 RAD21 CHAMP1 | C6orf203 RTN4IP1 QRSL1 CD24 |
| GH06G107027 | 1.1 | ENCODE | 8.7 | +0.2 | 194 | 1.6 | HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B | C6orf203 RPL3P7 PIR49317 |
| GH06G107064 | 1 | Ensembl ENCODE | 0.3 | +36.7 | 36695 | 0.7 | IRF2 ETV1 ASH2L EED NR2F6 IKZF2 NFIA BHLHE40 CBFB NR2F1 | PIR49317 C6orf203 |
| GH06G107042 | 0.6 | ENCODE | 0.4 | +14.5 | 14481 | 0.5 | PKNOX1 MTA2 NR2F1 IKZF1 REST RELB DPF2 SPI1 | C6orf203 PIR49317 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around C6orf203 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the C6orf203 gene promoter:
Regulatory Element Products
Genomic Location for C6orf203 Gene
- Chromosome:
- 6
- Start:
- 107,028,172 bp from pter
- End:
- 107,051,586 bp from pter
- Size:
- 23,415 bases
- Orientation:
- Plus strand
Genomic View for C6orf203 Gene
Genes around C6orf203 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6q21 by Ensembl
- 6q21 by Entrez Gene
- 6q21 by HGNC
C6orf203 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C6orf203 Gene
Proteins for C6orf203 Gene
-
Protein details for C6orf203 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9P0P8-CF203_HUMAN
- Recommended name:
- Uncharacterized protein C6orf203
- Protein Accession:
- Q9P0P8
- B3KRG9
Protein attributes for C6orf203 Gene
- Size:
- 240 amino acids
- Molecular mass:
- 27941 Da
- Quaternary structure:
- No Data Available
Protein Expression for C6orf203 Gene
Post-translational modifications for C6orf203 Gene
Other Protein References for C6orf203 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for C6orf203
- Novus Biologicals Antibodies for C6orf203
-
Abcam antibodies for C6orf203
- Invitrogen Antibodies for C6orf203
- Search GeneTex for Antibodies for C6orf203
Protein Products
-
OriGene Purified Proteins for C6orf203
- Search Origene for MassSpec and Protein Over-expression Lysates for C6orf203
- Origene Custom Protein Services for C6orf203
- Search GeneTex for Proteins for C6orf203
Assay Products
No data available for DME Specific Peptides for C6orf203 Gene
Domains & Families for C6orf203 Gene
Protein Domains for C6orf203 Gene
- ProtoNet:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C6orf203 Gene
Function for C6orf203 Gene
Phenotypes for C6orf203 Gene
- GenomeRNAi human phenotypes for C6orf203:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for C6orf203
-
-
ViGene Biosciences lentiviral particle packaged cDNA for C6orf203 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C6orf203 gene
- Search ViGene Biosciences for C6orf203
CRISPR Products
-
OriGene CRISPR knockouts for C6orf203
-
Santa Cruz Biotechnology (SCBT) CRISPR for C6orf203
- GenScript: Design CRISPR guide RNA sequences for C6orf203
miRNA Products
- Search ViGene Biosciences for C6orf203
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for C6orf203
- Browse OriGene Inhibitory RNA Products For C6orf203
-
ViGene Biosciences ready-to-package AAV shRNAs for C6orf203 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for C6orf203
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf203
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for C6orf203
-
ViGene Biosciences adenoviral particle packaged cDNA for C6orf203 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for C6orf203 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C6orf203 gene
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C6orf203 Gene
Localization for C6orf203 Gene
| Compartment | Confidence |
|---|---|
| mitochondrion | 5 |
| extracellular | 2 |
| peroxisome | 1 |
| nucleus | 1 |
| endoplasmic reticulum | 1 |
| cytosol | 1 |
| golgi apparatus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005739 | mitochondrion | IDA | 20833797 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for C6orf203 Gene
Transcripts for C6orf203 Gene
mRNA/cDNA for C6orf203 Gene
- (7) REFSEQ mRNAs :
- (3) Additional mRNA sequences :
- (50) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for C6orf203 Gene
- Chromosome 6 open reading frame 203:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for C6orf203
-
Santa Cruz Biotechnology (SCBT) CRISPR for C6orf203
- GenScript: Design CRISPR guide RNA sequences for C6orf203
miRNA Products
- Search ViGene Biosciences for C6orf203
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for C6orf203
- Browse OriGene Inhibitory RNA Products For C6orf203
-
ViGene Biosciences ready-to-package AAV shRNAs for C6orf203 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for C6orf203
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf203
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for C6orf203 Gene
This gene is overexpressed in Lung (7.6) and Peripheral blood mononuclear cells (7.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C6orf203 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of C6orf203 Gene:
C6orf203SOURCE GeneReport for Unigene cluster for C6orf203 Gene:
Hs.486084Evidence on tissue expression from TISSUES for C6orf203 Gene
- Nervous system(4.3)
- Liver(4.2)
- Blood(4.1)
- Bone marrow(4.1)
Primer Products
-
OriGene qPCR primer pairs and template standards for C6orf203
-
OriGene qPCR primer pairs for C6orf203
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for C6orf203 Gene
Orthologs for C6orf203 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C6orf203 35 |
|
OneToOne | |
| C6H6orf203 34 |
|
||||
| dog (Canis familiaris) |
Mammalia | C12H6orf203 34 |
|
||
| C6orf203 35 |
|
OneToOne | |||
| mouse (Mus musculus) |
Mammalia | 1700021F05Rik 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC683897 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | C6orf203 35 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | C9H6ORF203 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | C6orf203 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | C3H6ORF203 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | C6orf203 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | c6orf203 34 |
|
||
| Str.16694 34 |
|
||||
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.19228 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | C13H6orf203 35 |
|
OneToOne | |
| fruit fly (Drosophila melanogaster) |
Insecta | CG4884 35 |
|
OneToOne |
- Species where no ortholog for C6orf203 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for C6orf203 Gene
Pseudogenes.org Pseudogenes for C6orf203 Gene
No data available for Paralogs for C6orf203 Gene
Variants for C6orf203 Gene
| SNP ID | Clin | Chr 06 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000083621 | -- | 107,050,275(+) | TTTGT(A/G)AGTGA | intron-variant | |
| rs1000193914 | -- | 107,043,079(+) | GTAAT(C/G)CCAGC | intron-variant | |
| rs1000332643 | -- | 107,038,106(+) | TTAGA(C/T)TGGAG | intron-variant | |
| rs1000660957 | -- | 107,032,509(+) | AGTTC(A/G)AGACC | intron-variant | |
| rs1001011945 | -- | 107,032,026(+) | AGTCA(A/G)TTAAG | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv6135n100 | CNV | gain | 25217958 |
| dgv87n68 | CNV | loss | 17160897 |
| esv2732546 | CNV | deletion | 23290073 |
| esv3610289 | CNV | loss | 21293372 |
| esv3610290 | CNV | loss | 21293372 |
| nsv508425 | CNV | deletion | 20534489 |
| nsv509145 | CNV | insertion | 20534489 |
| nsv510909 | OTHER | complex | 20534489 |
| nsv5431 | CNV | insertion | 18451855 |
Residual Variation Intolerance Score:
73.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.15;
23.22% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for C6orf203 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- C6orf203
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf203 Gene
Disorders for C6orf203 Gene
Relevant External Links for C6orf203
No disorders were found for C6orf203 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C6orf203 Gene
Publications for C6orf203 Gene
- Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3 4 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
- The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
- From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. (PMID: 11707072) Reymond A. … Antonarakis S.E. (Genomics 2001) 2 3 64
Products for C6orf203 Gene
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- Custom Antibody ServicesOriGene Antibodies for C6orf203
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- OriGene Purified Proteins for C6orf203
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- OriGene qPCR primer pairs and template standards for C6orf203
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- Novus Biologicals Antibodies for C6orf203
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- Horizon Cell Lines for C6orf203
- Cyagen custom Knockout/knockin (KOKI) mouse models for C6orf203
- VectorBuilder custom plasmid, inducible vectors for C6orf203
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf203
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for C6orf203 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
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- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
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- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
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- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
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- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer