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Aliases for C6orf201 Gene

Aliases for C6orf201 Gene

  • Chromosome 6 Open Reading Frame 201 2 3 5
  • Uncharacterized Protein C6orf201 3
  • Protein MGC87625 3
  • DJ1013A10.5 3

External Ids for C6orf201 Gene

Previous GeneCards Identifiers for C6orf201 Gene

  • GC00U914401
  • GC06U900580
  • GC06P004025
  • GC06P003955

Summaries for C6orf201 Gene

GeneCards Summary for C6orf201 Gene

C6orf201 (Chromosome 6 Open Reading Frame 201) is a Protein Coding gene. Among its related pathways are Mesodermal Commitment Pathway.

Additional gene information for C6orf201 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf201 Gene

Genomics for C6orf201 Gene

Regulatory Elements for C6orf201 Gene

Enhancers for C6orf201 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H004133 1.1 ENCODE 36.9 +56.0 56025 3.8 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 ZNF143 C6orf201 PSMG4 PRPF4B FAM217A ECI2 GC06P004132 ENSG00000254821
GH06H004316 1.9 FANTOM5 Ensembl ENCODE dbSUPER 19.2 +240.8 240837 7.6 PKNOX1 FOXA2 ARNT SIN3A FEZF1 ZNF2 ZNF766 FOS ZNF548 REST PRPF4B CDYL C6orf201 LOC102724096 LINC02533 PSMC1P11 LOC101927913 LOC107987516 LYRM4-AS1 ENSG00000270504
GH06H004017 1.4 ENCODE dbSUPER 23.6 -58.7 -58680 7 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 SSRP1 PRPF4B PSMG4 RIPK1 ENSG00000228170 C6orf201 ENSG00000272320 LOC102724096 LOC107987516 LINC02533 PSMC1P11
GH06H004809 1.3 Ensembl ENCODE 19.7 +732.0 732030 2.6 FOXA2 ARNT ZNF133 FEZF1 ZNF2 ZNF416 FOS ATF7 ZNF548 TSHZ1 PRPF4B C6orf201 LOC442155 FAM50B LOC101927913 GC06P004847
GH06H003156 2 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -917.1 -917099 11.6 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 TUBB2A TUBB2B TUBB2BP1 PRPF4B PSMG4 C6orf201 RIPK1 BPHL LOC105374889
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C6orf201 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C6orf201 Gene

Genomic Locations for C6orf201 Gene
51,746 bases
Plus strand

Genomic View for C6orf201 Gene

Genes around C6orf201 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C6orf201 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C6orf201 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf201 Gene

Proteins for C6orf201 Gene

  • Protein details for C6orf201 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C6orf201
    Protein Accession:
    Secondary Accessions:
    • A6NLI6
    • Q6NXN5

    Protein attributes for C6orf201 Gene

    140 amino acids
    Molecular mass:
    16243 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C6orf201 Gene


neXtProt entry for C6orf201 Gene

Post-translational modifications for C6orf201 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C6orf201 Gene

No data available for DME Specific Peptides for C6orf201 Gene

Domains & Families for C6orf201 Gene

Gene Families for C6orf201 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C6orf201 Gene


Suggested Antigen Peptide Sequences for C6orf201 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf201: view

No data available for UniProtKB/Swiss-Prot for C6orf201 Gene

Function for C6orf201 Gene

Phenotypes From GWAS Catalog for C6orf201 Gene

genes like me logo Genes that share phenotypes with C6orf201: view

Animal Model Products

CRISPR Products

miRNA for C6orf201 Gene

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C6orf201 Gene

Localization for C6orf201 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C6orf201 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C6orf201 Gene

Pathways & Interactions for C6orf201 Gene

SuperPathways for C6orf201 Gene

SuperPathway Contained pathways
1 Mesodermal Commitment Pathway
genes like me logo Genes that share pathways with C6orf201: view

Pathways by source for C6orf201 Gene

1 BioSystems pathway for C6orf201 Gene

Interacting Proteins for C6orf201 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: ENSP00000420610 Q7Z4U5-CF201_HUMAN for C6orf201 Gene via STRING IID

Gene Ontology (GO) - Biological Process for C6orf201 Gene


No data available for SIGNOR curated interactions for C6orf201 Gene

Drugs & Compounds for C6orf201 Gene

No Compound Related Data Available

Transcripts for C6orf201 Gene

Unigene Clusters for C6orf201 Gene

Chromosome 6 open reading frame 201:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf201 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b
SP1: -
SP3: - - - -
SP4: - -

Relevant External Links for C6orf201 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C6orf201 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C6orf201 Gene

mRNA differential expression in normal tissues according to GTEx for C6orf201 Gene

This gene is overexpressed in Testis (x43.5).

Protein differential expression in normal tissues from HIPED for C6orf201 Gene

This gene is overexpressed in Pancreas (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C6orf201 Gene

Protein tissue co-expression partners for C6orf201 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of C6orf201 Gene:


SOURCE GeneReport for Unigene cluster for C6orf201 Gene:

genes like me logo Genes that share expression patterns with C6orf201: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C6orf201 Gene

Orthologs for C6orf201 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf201 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C6H6orf201 33
  • 98.33 (n)
C6orf201 34
  • 80 (a)
(Canis familiaris)
Mammalia C35H6orf201 33
  • 77.89 (n)
C6orf201 34
  • 17 (a)
(Bos Taurus)
Mammalia C23H6orf201 33
  • 66.67 (n)
C6orf201 34
  • 33 (a)
(Rattus norvegicus)
Mammalia RGD1307537 33
  • 66.17 (n)
(Mus musculus)
Mammalia 4933417A18Rik 33 16 34
  • 64.51 (n)
(Monodelphis domestica)
Mammalia C6orf201 34
  • 18 (a)
(Anolis carolinensis)
Reptilia C6orf201 34
  • 18 (a)
Species where no ortholog for C6orf201 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C6orf201 Gene

Gene Tree for C6orf201 (if available)
Gene Tree for C6orf201 (if available)

Paralogs for C6orf201 Gene

No data available for Paralogs for C6orf201 Gene

Variants for C6orf201 Gene

Sequence variations from dbSNP and Humsavar for C6orf201 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000085707 -- 4,078,013(+) AACAG(C/T)CACTG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000086065 -- 4,101,237(+) ATTTT(A/G)TTTTA intron-variant
rs1000217623 -- 4,110,985(+) ATTTA(A/G)AAGTG intron-variant
rs1000273393 -- 4,099,638(+) AGCAC(C/T)ATTGG intron-variant
rs1000428451 -- 4,084,728(+) ACACC(C/T)TGCCT intron-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for C6orf201 Gene

Variant ID Type Subtype PubMed ID
nsv600860 CNV loss 21841781
nsv1140599 CNV deletion 24896259
esv3570734 CNV loss 25503493
esv2422457 CNV deletion 17116639
esv2422231 CNV deletion 17116639

Variation tolerance for C6orf201 Gene

Residual Variation Intolerance Score: 90.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.24; 81.14% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for C6orf201 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf201 Gene

Disorders for C6orf201 Gene

Relevant External Links for C6orf201

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for C6orf201 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C6orf201 Gene

Publications for C6orf201 Gene

  1. Protein array based interactome analysis of amyloid-β indicates an inhibition of protein translation. (PMID: 21244100) Virok DP … Fülöp L (Journal of proteome research 2011) 3 60
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 60
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60
  5. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 4 60

Products for C6orf201 Gene

Sources for C6orf201 Gene

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