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Aliases for C6orf201 Gene

Aliases for C6orf201 Gene

  • Chromosome 6 Open Reading Frame 201 2 3
  • Uncharacterized Protein C6orf201 3
  • Protein MGC87625 3
  • DJ1013A10.5 3

External Ids for C6orf201 Gene

Previous GeneCards Identifiers for C6orf201 Gene

  • GC00U914401
  • GC06U900580
  • GC06P004025
  • GC06P003955

Summaries for C6orf201 Gene

GeneCards Summary for C6orf201 Gene

C6orf201 (Chromosome 6 Open Reading Frame 201) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf201 Gene

Genomics for C6orf201 Gene

Regulatory Elements for C6orf201 Gene

Genomic Location for C6orf201 Gene

Start:
4,079,206 bp from pter
End:
4,130,951 bp from pter
Size:
51,746 bases
Orientation:
Plus strand

Genomic View for C6orf201 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf201 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf201 Gene

Proteins for C6orf201 Gene

  • Protein details for C6orf201 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z4U5-CF201_HUMAN
    Recommended name:
    Uncharacterized protein C6orf201
    Protein Accession:
    Q7Z4U5
    Secondary Accessions:
    • A6NLI6
    • Q6NXN5

    Protein attributes for C6orf201 Gene

    Size:
    140 amino acids
    Molecular mass:
    16243 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C6orf201 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C6orf201 Gene

Proteomics data for C6orf201 Gene at MOPED

Post-translational modifications for C6orf201 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C6orf201 Gene

No data available for DME Specific Peptides for C6orf201 Gene

Domains for C6orf201 Gene

Protein Domains for C6orf201 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C6orf201 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf201: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C6orf201 Gene

Function for C6orf201 Gene

Phenotypes for C6orf201 Gene

GenomeRNAi human phenotypes for C6orf201:
genes like me logo Genes that share phenotypes with C6orf201: view

miRNA for C6orf201 Gene

miRTarBase miRNAs that target C6orf201

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for C6orf201 Gene

Localization for C6orf201 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf201 Gene COMPARTMENTS Subcellular localization image for C6orf201 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C6orf201 Gene

Pathways for C6orf201 Gene

SuperPathways for C6orf201 Gene

No Data Available

Interacting Proteins for C6orf201 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000420610%0d%0a9606.ENSP00000362931%0d%0a
Selected Interacting proteins: ENSP00000420610 for C6orf201 Gene via STRING

Symbol External ID(s) Details
SRPK1

Gene Ontology (GO) - Biological Process for C6orf201 Gene

None

No data available for Pathways by source for C6orf201 Gene

Transcripts for C6orf201 Gene

Unigene Clusters for C6orf201 Gene

Chromosome 6 open reading frame 201:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf201 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b
SP1: -
SP2:
SP3: - - - -
SP4: - -

Relevant External Links for C6orf201 Gene

GeneLoc Exon Structure for
C6orf201
ECgene alternative splicing isoforms for
C6orf201

Expression for C6orf201 Gene

mRNA expression in normal human tissues for C6orf201 Gene

mRNA differential expression in normal tissues according to GTEx for C6orf201 Gene

This gene is overexpressed in Testis (43.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C6orf201 Gene

SOURCE GeneReport for Unigene cluster for C6orf201 Gene Hs.716731

genes like me logo Genes that share expressions with C6orf201: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for C6orf201 Gene

Orthologs for C6orf201 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf201 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf201 35
  • 98.33 (n)
  • 95 (a)
C6orf201 36
  • 80 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C23H6orf201 35
  • 66.67 (n)
  • 56.82 (a)
C6orf201 36
  • 33 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C35H6orf201 35
  • 77.89 (n)
  • 69.47 (a)
C6orf201 36
  • 17 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4933417A18Rik 35
  • 64.51 (n)
  • 53.24 (a)
4933417A18Rik 16
4933417A18Rik 36
  • 33 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C6orf201 36
  • 18 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1307537 35
  • 66.17 (n)
  • 52.63 (a)
lizard
(Anolis carolinensis)
Reptilia C6orf201 36
  • 18 (a)
OneToOne
Species with no ortholog for C6orf201:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C6orf201 Gene

ENSEMBL:
Gene Tree for C6orf201 (if available)
TreeFam:
Gene Tree for C6orf201 (if available)

Paralogs for C6orf201 Gene

No data available for Paralogs for C6orf201 Gene

Variants for C6orf201 Gene

Sequence variations from dbSNP and Humsavar for C6orf201 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs101418 -- 4,083,038(+) AGCCT(C/T)AGCTT intron-variant
rs582008 -- 4,104,333(+) gtgac(A/G)tgact intron-variant
rs583782 -- 4,110,576(+) tttat(A/T)tgtct intron-variant
rs583881 -- 4,110,500(+) aatca(C/T)cttgg intron-variant
rs595977 -- 4,103,576(-) aaaaa(A/G)gaaaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C6orf201 Gene

Variant ID Type Subtype PubMed ID
esv2422231 CNV Deletion 17116639
esv2422457 CNV Deletion 17116639

Relevant External Links for C6orf201 Gene

HapMap Linkage Disequilibrium report
C6orf201

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf201 Gene

Disorders for C6orf201 Gene

No disorders were found for C6orf201 Gene.

No data available for UniProtKB/Swiss-Prot for C6orf201 Gene

Publications for C6orf201 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for C6orf201 Gene

Sources for C6orf201 Gene

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