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Aliases for C6orf183 Gene

Aliases for C6orf183 Gene

  • Chromosome 6 Open Reading Frame 183 2 3

External Ids for C6orf183 Gene

Previous GeneCards Identifiers for C6orf183 Gene

  • GC00U914137
  • GC06U900605
  • GC06P109595
  • GC06P109487
  • GC06P109505
  • GC06P109165

Summaries for C6orf183 Gene

GeneCards Summary for C6orf183 Gene

C6orf183 (Chromosome 6 Open Reading Frame 183) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf183 Gene

Genomics for C6orf183 Gene

Regulatory Elements for C6orf183 Gene

Enhancers for C6orf183 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G109320 0.2 dbSUPER 9.3 +104.0 104047 1.1 CD164 CCDC162P ENSG00000233908 PTCHD3P3 SMPD2 PPIL6 C6orf183 RPL7P28 RNY3P11
GH06G109235 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +21.2 21188 5.0 HDGF PKNOX1 ATF1 CREB3L1 ARNT ARID4B TCF12 GATA2 FOS REST CCDC162P CD164 MICAL1 SMPD2 C6orf183 LOC105377933
GH06G109241 1.1 FANTOM5 ENCODE dbSUPER 0.3 +24.2 24162 0.2 ZNF316 CEBPB CEBPG EP300 MYC CCDC162P CD164 MICAL1 SMPD2 LOC105377933 C6orf183
GH06G109228 0.7 ENCODE 0.4 +12.8 12831 2.8 ZNF211 PKNOX1 KLF1 ZNF687 MNT KLF4 DPF2 RAD21 FOXA1 MBD2 CCDC162P CD164 PPIL6 ENSG00000233908 PTCHD3P3 SMPD2 ZBTB24 C6orf183 LOC105377933
GH06G109187 0.8 ENCODE 0.3 -29.3 -29279 0.2 HDAC1 ELF3 CTCF RB1 ARNT RAD21 CHAMP1 RFX5 ZNF316 CBX5 LOC105377934 C6orf183
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around C6orf183 on UCSC Golden Path with GeneCards custom track

Genomic Location for C6orf183 Gene

Chromosome:
6
Start:
109,217,301 bp from pter
End:
109,285,010 bp from pter
Size:
67,710 bases
Orientation:
Plus strand

Genomic View for C6orf183 Gene

Genes around C6orf183 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C6orf183 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C6orf183 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf183 Gene

Proteins for C6orf183 Gene

  • Protein details for C6orf183 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T699-CF183_HUMAN
    Recommended name:
    Putative uncharacterized protein C6orf183
    Protein Accession:
    Q5T699

    Protein attributes for C6orf183 Gene

    Size:
    404 amino acids
    Molecular mass:
    46784 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C6orf183 Gene

Post-translational modifications for C6orf183 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C6orf183 Gene

No data available for DME Specific Peptides for C6orf183 Gene

Domains & Families for C6orf183 Gene

Protein Domains for C6orf183 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf183: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C6orf183 Gene

Function for C6orf183 Gene

Phenotypes for C6orf183 Gene

GenomeRNAi human phenotypes for C6orf183:
genes like me logo Genes that share phenotypes with C6orf183: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C6orf183 Gene

Localization for C6orf183 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C6orf183 Gene

Pathways & Interactions for C6orf183 Gene

SuperPathways for C6orf183 Gene

No Data Available

Interacting Proteins for C6orf183 Gene

Gene Ontology (GO) - Biological Process for C6orf183 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C6orf183 Gene

Drugs & Compounds for C6orf183 Gene

No Compound Related Data Available

Transcripts for C6orf183 Gene

mRNA/cDNA for C6orf183 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf183 Gene

No ASD Table

Relevant External Links for C6orf183 Gene

GeneLoc Exon Structure for
C6orf183
ECgene alternative splicing isoforms for
C6orf183

Expression for C6orf183 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C6orf183 Gene

mRNA differential expression in normal tissues according to GTEx for C6orf183 Gene

This gene is overexpressed in Testis (x5.1).

Protein differential expression in normal tissues from HIPED for C6orf183 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C6orf183 Gene



Protein tissue co-expression partners for C6orf183 Gene

NURSA nuclear receptor signaling pathways regulating expression of C6orf183 Gene:

C6orf183
genes like me logo Genes that share expression patterns with C6orf183: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C6orf183 Gene

Orthologs for C6orf183 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf183 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf183 34
  • 99.49 (n)
dog
(Canis familiaris)
Mammalia LOC612235 34
  • 86.2 (n)
chicken
(Gallus gallus)
Aves LOC101748060 34
  • 64.1 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100496491 34
zebrafish
(Danio rerio)
Actinopterygii LOC100536324 34
  • 55.46 (n)
Species where no ortholog for C6orf183 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

No data available for Evolution for C6orf183 Gene

Paralogs for C6orf183 Gene

No data available for Paralogs for C6orf183 Gene

Variants for C6orf183 Gene

Sequence variations from dbSNP and Humsavar for C6orf183 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000014039 -- 109,221,145(+) ATTCC(A/G)TGATT upstream-variant-2KB
rs1000031495 -- 109,244,731(+) TACTC(C/T)CTGGT intron-variant
rs1000120182 -- 109,227,748(+) GTAAC(A/C)CATGA intron-variant
rs1000134723 -- 109,275,227(+) CAATG(C/T)AGGGT intron-variant
rs1000271659 -- 109,245,046(+) CTCAC(A/G)CTGTC intron-variant

Relevant External Links for C6orf183 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C6orf183

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C6orf183 Gene

Disorders for C6orf183 Gene

No disorders were found for C6orf183 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for C6orf183 Gene

Publications for C6orf183 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for C6orf183 Gene

Sources for C6orf183 Gene

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