Aliases for C6orf183 Gene
Previous GeneCards Identifiers for C6orf183 Gene
- GC00U914137
- GC06U900605
- GC06P109595
- GC06P109487
- GC06P109505
- GC06P109165
Summaries for C6orf183 Gene
GeneCards Summary for C6orf183 Gene
C6orf183 (Chromosome 6 Open Reading Frame 183) is a Protein Coding gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf183 Gene
Genomics for C6orf183 Gene
Regulatory Elements for C6orf183 Gene
Enhancers for C6orf183 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH06G109320 | 0.2 | dbSUPER | 9.3 | +104.0 | 104047 | 1.1 | CD164 CCDC162P ENSG00000233908 PTCHD3P3 PPIL6 SMPD2 C6orf183 RPL7P28 RNY3P11 | |
| GH06G109235 | 1.9 | FANTOM5 Ensembl ENCODE dbSUPER | 0.3 | +21.2 | 21188 | 5.0 | HDGF PKNOX1 ATF1 CREB3L1 ARNT ARID4B TCF12 GATA2 FOS REST | CCDC162P CD164 MICAL1 SMPD2 C6orf183 LOC105377933 |
| GH06G109241 | 1.1 | FANTOM5 ENCODE dbSUPER | 0.3 | +24.2 | 24162 | 0.2 | ZNF316 CEBPB CEBPG EP300 MYC | CCDC162P CD164 MICAL1 SMPD2 C6orf183 LOC105377933 |
| GH06G109228 | 0.7 | ENCODE | 0.4 | +12.8 | 12831 | 2.8 | ZNF211 PKNOX1 KLF1 ZNF687 MNT KLF4 DPF2 RAD21 FOXA1 MBD2 | CCDC162P CD164 PPIL6 ENSG00000233908 PTCHD3P3 SMPD2 ZBTB24 C6orf183 LOC105377933 |
| GH06G109187 | 0.8 | ENCODE | 0.3 | -29.3 | -29279 | 0.2 | HDAC1 ELF3 CTCF RB1 ARNT RAD21 CHAMP1 RFX5 ZNF316 CBX5 | LOC105377934 C6orf183 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around C6orf183 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for C6orf183 Gene
- Chromosome:
- 6
- Start:
- 109,217,301 bp from pter
- End:
- 109,285,010 bp from pter
- Size:
- 67,710 bases
- Orientation:
- Plus strand
Genomic View for C6orf183 Gene
Genes around C6orf183 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6q21 by Entrez Gene
- 6q21 by HGNC
C6orf183 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C6orf183 Gene
Proteins for C6orf183 Gene
-
Protein details for C6orf183 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q5T699-CF183_HUMAN
- Recommended name:
- Putative uncharacterized protein C6orf183
- Protein Accession:
- Q5T699
Protein attributes for C6orf183 Gene
- Size:
- 404 amino acids
- Molecular mass:
- 46784 Da
- Quaternary structure:
- No Data Available
Protein Expression for C6orf183 Gene
Post-translational modifications for C6orf183 Gene
Other Protein References for C6orf183 Gene
- REFSEQ proteins:
Antibody Products
- Search GeneTex for Antibodies for C6orf183
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for C6orf183
- Origene Custom Protein Services for C6orf183
- Search GeneTex for Proteins for C6orf183
Assay Products
No data available for DME Specific Peptides for C6orf183 Gene
Domains & Families for C6orf183 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C6orf183 Gene
Function for C6orf183 Gene
Phenotypes for C6orf183 Gene
- GenomeRNAi human phenotypes for C6orf183:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for C6orf183
-
- Search ViGene Biosciences for C6orf183
CRISPR Products
- Browse CRISPR knockouts for C6orf183
miRNA Products
- Search ViGene Biosciences for C6orf183
Inhibitory RNA Products
- Search ViGene Biosciences for C6orf183
Clone Products
- VectorBuilder custom plasmid, inducible vectors for C6orf183
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf183
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for C6orf183
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C6orf183 Gene
Localization for C6orf183 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for C6orf183 Gene
Transcripts for C6orf183 Gene
mRNA/cDNA for C6orf183 Gene
- (4) REFSEQ mRNAs :
CRISPR Products
- Browse CRISPR knockouts for C6orf183
miRNA Products
- Search ViGene Biosciences for C6orf183
Inhibitory RNA Products
- Search ViGene Biosciences for C6orf183
Clone Products
- VectorBuilder custom plasmid, inducible vectors for C6orf183
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf183
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for C6orf183 Gene
mRNA differential expression in normal tissues according to GTEx for C6orf183 Gene
This gene is overexpressed in Testis (x5.1).
This gene is overexpressed in Platelet (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C6orf183 Gene
NURSA nuclear receptor signaling pathways regulating expression of C6orf183 Gene:
C6orf183Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C6orf183 Gene
Orthologs for C6orf183 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C6H6orf183 34 |
|
||
| dog (Canis familiaris) |
Mammalia | LOC612235 34 |
|
||
| chicken (Gallus gallus) |
Aves | LOC101748060 34 |
|
||
| tropical clawed frog (Silurana tropicalis) |
Amphibia | LOC100496491 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LOC100536324 34 |
|
- Species where no ortholog for C6orf183 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
No data available for Evolution for C6orf183 Gene
Paralogs for C6orf183 Gene
No data available for Paralogs for C6orf183 Gene
Variants for C6orf183 Gene
| SNP ID | Clin | Chr 06 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000014039 | -- | 109,221,145(+) | ATTCC(A/G)TGATT | upstream-variant-2KB | |
| rs1000031495 | -- | 109,244,731(+) | TACTC(C/T)CTGGT | intron-variant | |
| rs1000120182 | -- | 109,227,748(+) | GTAAC(A/C)CATGA | intron-variant | |
| rs1000134723 | -- | 109,275,227(+) | CAATG(C/T)AGGGT | intron-variant | |
| rs1000271659 | -- | 109,245,046(+) | CTCAC(A/G)CTGTC | intron-variant |
Relevant External Links for C6orf183 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- C6orf183
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C6orf183 Gene
Disorders for C6orf183 Gene
No disorders were found for C6orf183 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for C6orf183 Gene
Publications for C6orf183 Gene
- The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
- The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64
Products for C6orf183 Gene
- Browse R&D Systems for Antibodies
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- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
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- Browse Immunoprecipitation Assays
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- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for C6orf183
- Origene Custom Protein Services for C6orf183
- Browse OriGene Inhibitory RNA Products For C6orf183
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for C6orf183
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For C6orf183
- GenScript: Next-day shipping cDNA ORF clone for C6orf183 in any vector
- GenScript Custom Purified and Recombinant Proteins Services for C6orf183
- GenScript Custom Assay Services for C6orf183
- GenScript Custom overexpressing Cell Line Services for C6orf183
- Browse GenScript CRISPR for C6orf183
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for C6orf183
- Browse Sino Biological cDNA Clones
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- Sino Biological Antibodies
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- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for C6orf183
- VectorBuilder custom plasmid, inducible vectors for C6orf183
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf183
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for C6orf183 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
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- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
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- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer