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Aliases for C6orf165 Gene

Aliases for C6orf165 Gene

  • Chromosome 6 Open Reading Frame 165 2 3
  • UPF0704 Protein C6orf165 3
  • DJ382I10.1 3

External Ids for C6orf165 Gene

Summaries for C6orf165 Gene

GeneCards Summary for C6orf165 Gene

C6orf165 (Chromosome 6 Open Reading Frame 165) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf165 Gene

Genomics for C6orf165 Gene

Genomic Location for C6orf165 Gene

Start:
87,407,972 bp from pter
End:
87,464,473 bp from pter
Size:
56,502 bases
Orientation:
Plus strand

Genomic View for C6orf165 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for C6orf165 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf165 Gene

Regulatory Elements for C6orf165 Gene

Proteins for C6orf165 Gene

  • Protein details for C6orf165 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYR0-CF165_HUMAN
    Recommended name:
    UPF0704 protein C6orf165
    Protein Accession:
    Q8IYR0
    Secondary Accessions:
    • A8K969
    • E1P507
    • Q8N9U4

    Protein attributes for C6orf165 Gene

    Size:
    622 amino acids
    Molecular mass:
    71193 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC04234.1; Type=Miscellaneous discrepancy; Note=Intron retention.; Evidence={ECO:0000305};

neXtProt entry for C6orf165 Gene

Proteomics data for C6orf165 Gene at MOPED

Post-translational modifications for C6orf165 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C6orf165 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C6orf165 Gene

Domains for C6orf165 Gene

Protein Domains for C6orf165 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C6orf165 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IYR0

UniProtKB/Swiss-Prot:

CF165_HUMAN
Family:
  • Belongs to the UPF0704 family.:
    • Q8IYR0
genes like me logo Genes that share domains with C6orf165: view

No data available for Gene Families for C6orf165 Gene

Function for C6orf165 Gene

Gene Ontology (GO) - Molecular Function for C6orf165 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with C6orf165: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for C6orf165 Gene

Localization for C6orf165 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for C6orf165 Gene COMPARTMENTS Subcellular localization image for C6orf165 gene
Compartment Confidence
cytosol 2
cytoskeleton 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C6orf165 Gene

Pathways for C6orf165 Gene

SuperPathways for C6orf165 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C6orf165 Gene

None

No data available for Pathways by source for C6orf165 Gene

Transcripts for C6orf165 Gene

mRNA/cDNA for C6orf165 Gene

Unigene Clusters for C6orf165 Gene

Chromosome 6 open reading frame 165:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf165 Gene

No ASD Table

Relevant External Links for C6orf165 Gene

GeneLoc Exon Structure for
C6orf165
ECgene alternative splicing isoforms for
C6orf165

Expression for C6orf165 Gene

mRNA expression in normal human tissues for C6orf165 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for C6orf165 Gene

SOURCE GeneReport for Unigene cluster for C6orf165 Gene Hs.82921

genes like me logo Genes that share expressions with C6orf165: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for C6orf165 Gene

Orthologs for C6orf165 Gene

This gene was present in the common ancestor of animals.

Orthologs for C6orf165 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 100 (a)
OneToMany
C6H6orf165 35
  • 99.73 (n)
  • 99.52 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 82 (a)
OneToMany
C9H6orf165 35
  • 86.08 (n)
  • 82.47 (a)
dog
(Canis familiaris)
Mammalia -- 36
  • 86 (a)
OneToMany
C12H6orf165 35
  • 87.67 (n)
  • 86.33 (a)
mouse
(Mus musculus)
Mammalia 1700003M02Rik 35
  • 81.08 (n)
  • 79.88 (a)
1700003M02Rik 16
1700003M02Rik 36
  • 80 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 74 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 71 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1310641 35
  • 81.08 (n)
  • 80.55 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 58 (a)
OneToMany
C6ORF165 35
  • 65.8 (n)
  • 58.54 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 68 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia c6orf165 35
  • 66.72 (n)
  • 64.72 (a)
zebrafish
(Danio rerio)
Actinopterygii C20H6orf165 36
  • 48 (a)
OneToMany
Dr.16986 35
zgc:109719 35
  • 55.26 (n)
  • 49.1 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008870 35
  • 41.68 (n)
  • 29.42 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG13436 36
  • 20 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 60 (a)
OneToMany
Species with no ortholog for C6orf165:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C6orf165 Gene

ENSEMBL:
Gene Tree for C6orf165 (if available)
TreeFam:
Gene Tree for C6orf165 (if available)

Paralogs for C6orf165 Gene

No data available for Paralogs for C6orf165 Gene

Variants for C6orf165 Gene

Sequence variations from dbSNP and Humsavar for C6orf165 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs7649 -- 87,464,396(+) TTTAT(A/C)AAACT utr-variant-3-prime
rs7707 -- 87,464,384(+) GGGTT(C/G)CCATA utr-variant-3-prime
rs16667 -- 87,414,043(+) ACAAC(-/AAT)GTTAG intron-variant
rs728582 -- 87,425,990(+) ATGAC(A/G)GGGTC intron-variant
rs932464 -- 87,444,967(+) TATCA(C/G)ATGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for C6orf165 Gene

Variant ID Type Subtype PubMed ID
nsv830722 CNV Gain 17160897
esv994317 CNV Insertion 20482838
esv274347 CNV Insertion 20981092
esv2732388 CNV Deletion 23290073
esv1979464 CNV Deletion 18987734
esv2732389 CNV Deletion 23290073
esv1288596 CNV Deletion 17803354
esv2732390 CNV Deletion 23290073

Relevant External Links for C6orf165 Gene

HapMap Linkage Disequilibrium report
C6orf165

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf165 Gene

Disorders for C6orf165 Gene

No disorders were found for C6orf165 Gene.

No data available for UniProtKB/Swiss-Prot for C6orf165 Gene

Publications for C6orf165 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for C6orf165 Gene

Sources for C6orf165 Gene

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