Aliases for C6orf163 Gene
External Ids for C6orf163 Gene
- HGNC: 21403
- Entrez Gene: 206412
- Ensembl: ENSG00000203872
- UniProtKB: Q5TEZ5
Previous GeneCards Identifiers for C6orf163 Gene
- GC06P088007
- GC06P088061
- GC06P088052
- GC06P088114
- GC06P088115
- GC06P088054
- GC06P085271
- GC06P087344
Summaries for C6orf163 Gene
GeneCards Summary for C6orf163 Gene
C6orf163 (Chromosome 6 Open Reading Frame 163) is a Protein Coding gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf163 Gene
Genomics for C6orf163 Gene
Regulatory Elements for C6orf163 Gene
Enhancers for C6orf163 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH06G087722 | 1.9 | FANTOM5 Ensembl ENCODE dbSUPER | 5.6 | +381.2 | 381214 | 4.3 | PKNOX1 FOXA2 CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 FOS | ZNF292 AKIRIN2 C6orf163 SLC35A1 SMIM8 RARS2 LINC01590 ENSG00000238628 GC06P087742 |
| GH06G087328 | 0.7 | ENCODE | 5.8 | -14.0 | -14018 | 0.3 | KLF1 L3MBTL2 SIN3A KLF17 ZBTB8A ZNF324 ZNF610 EGR1 ZNF341 ZNF629 | LINC01590 C6orf163 GJB7 SMIM8 |
| GH06G087577 | 0.6 | ENCODE | 4.5 | +235.8 | 235788 | 2.2 | SREBF1 ZNF202 ZNF362 BHLHE40 ZNF10 ZNF350 SP7 | SLC35A1 ZNF292 RARS2 C6orf163 GC06P087588 GC06P087563 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around C6orf163 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the C6orf163 gene promoter:
Regulatory Element Products
Genomic Location for C6orf163 Gene
- Chromosome:
- 6
- Start:
- 87,343,080 bp from pter
- End:
- 87,365,553 bp from pter
- Size:
- 22,474 bases
- Orientation:
- Plus strand
Genomic View for C6orf163 Gene
Genes around C6orf163 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6q15 by Ensembl
- 6q15 by Entrez Gene
- 6q15 by HGNC
C6orf163 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C6orf163 Gene
Proteins for C6orf163 Gene
-
Protein details for C6orf163 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q5TEZ5-CF163_HUMAN
- Recommended name:
- Uncharacterized protein C6orf163
- Protein Accession:
- Q5TEZ5
Protein attributes for C6orf163 Gene
- Size:
- 329 amino acids
- Molecular mass:
- 38553 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=CAB71116.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Protein Expression for C6orf163 Gene
Post-translational modifications for C6orf163 Gene
Other Protein References for C6orf163 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for C6orf163
-
Abcam antibodies for C6orf163
- Invitrogen Antibodies for C6orf163
- Search GeneTex for Antibodies for C6orf163
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for C6orf163
- Origene Custom Protein Services for C6orf163
- Novus Biologicals proteins for C6orf163
- Search GeneTex for Proteins for C6orf163
Assay Products
No data available for DME Specific Peptides for C6orf163 Gene
Domains & Families for C6orf163 Gene
Protein Domains for C6orf163 Gene
- ProtoNet:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C6orf163 Gene
Function for C6orf163 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003674 | molecular_function | ND | -- |
Phenotypes for C6orf163 Gene
- GenomeRNAi human phenotypes for C6orf163:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for C6orf163
-
-
ViGene Biosciences lentiviral particle packaged cDNA for C6orf163 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C6orf163 gene
- Search ViGene Biosciences for C6orf163
CRISPR Products
-
OriGene CRISPR knockouts for C6orf163
-
Santa Cruz Biotechnology (SCBT) CRISPR for C6orf163
- GenScript: Design CRISPR guide RNA sequences for C6orf163
miRNA Products
- Search ViGene Biosciences for C6orf163
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for C6orf163
- Browse OriGene Inhibitory RNA Products For C6orf163
-
ViGene Biosciences ready-to-package AAV shRNAs for C6orf163 gene
Clone Products
-
OriGene ORF clones in human for C6orf163
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for C6orf163
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf163
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for C6orf163
-
ViGene Biosciences adenoviral particle packaged cDNA for C6orf163 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for C6orf163 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for C6orf163 gene
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C6orf163 Gene
Localization for C6orf163 Gene
| Compartment | Confidence |
|---|---|
| cytosol | 3 |
| nucleus | 2 |
| mitochondrion | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005575 | cellular_component | ND | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for C6orf163 Gene
Pathways & Interactions for C6orf163 Gene
No Data Available
Interacting Proteins for C6orf163 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0008150 | biological_process | ND | -- |
No data available for Pathways by source and SIGNOR curated interactions for C6orf163 Gene
Transcripts for C6orf163 Gene
mRNA/cDNA for C6orf163 Gene
- (6) REFSEQ mRNAs :
- (2) Additional mRNA sequences :
- (13) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for C6orf163 Gene
CRISPR Products
-
OriGene CRISPR knockouts for C6orf163
-
Santa Cruz Biotechnology (SCBT) CRISPR for C6orf163
- GenScript: Design CRISPR guide RNA sequences for C6orf163
miRNA Products
- Search ViGene Biosciences for C6orf163
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for C6orf163
- Browse OriGene Inhibitory RNA Products For C6orf163
-
ViGene Biosciences ready-to-package AAV shRNAs for C6orf163 gene
Clone Products
-
OriGene ORF clones in human for C6orf163
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for C6orf163
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf163
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for C6orf163 Gene
mRNA differential expression in normal tissues according to GTEx for C6orf163 Gene
This gene is overexpressed in Testis (x8.4).
This gene is overexpressed in Breast (64.1).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C6orf163 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of C6orf163 Gene:
C6orf163SOURCE GeneReport for Unigene cluster for C6orf163 Gene:
Hs.646309Primer Products
-
OriGene qPCR primer pairs for C6orf163
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C6orf163 Gene
Orthologs for C6orf163 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C6H6orf163 34 |
|
||
| C6orf163 35 |
|
OneToOne | |||
| dog (Canis familiaris) |
Mammalia | C12H6orf163 34 |
|
||
| C6ORF163 35 |
|
OneToOne | |||
| cow (Bos Taurus) |
Mammalia | C9H6orf163 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | RGD1563056 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Gm136 34 16 35 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
OneToMany | |
| -- 35 |
|
OneToMany | |||
| oppossum (Monodelphis domestica) |
Mammalia | C6orf163 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | C6ORF163 34 |
|
||
| C6orf163 35 |
|
OneToOne | |||
| lizard (Anolis carolinensis) |
Reptilia | C6orf163 35 |
|
OneToOne |
- Species where no ortholog for C6orf163 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for C6orf163 Gene
No data available for Paralogs for C6orf163 Gene
Variants for C6orf163 Gene
| SNP ID | Clin | Chr 06 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000627572 | -- | 87,345,969(+) | GTAAA(A/C)GAAAC | intron-variant, utr-variant-5-prime | |
| rs1000900952 | -- | 87,346,214(+) | AAGGG(C/T)GATTT | intron-variant, utr-variant-5-prime | |
| rs1001008122 | -- | 87,360,850(+) | ACAAC(A/G)GGCAC | intron-variant | |
| rs1001165892 | -- | 87,353,442(+) | GAAAA(-/T)TAAAA | intron-variant | |
| rs1001186237 | -- | 87,352,233(+) | GATAC(C/G)AAGAT | intron-variant |
Gene Damage Index Score:
4.12;
61.24% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for C6orf163 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- C6orf163
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf163 Gene
Disorders for C6orf163 Gene
Relevant External Links for C6orf163
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- C6orf163
No disorders were found for C6orf163 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C6orf163 Gene
Publications for C6orf163 Gene
- The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
Products for C6orf163 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for C6orf163
- Origene Custom Protein Services for C6orf163
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for C6orf163
- Browse OriGene Inhibitory RNA Products For C6orf163
- OriGene qPCR primer pairs for C6orf163
- OriGene CRISPR knockouts for C6orf163
- OriGene ORF clones in human for C6orf163
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For C6orf163
- GenScript: Next-day shipping cDNA ORF clone for C6orf163 in any vector
- GenScript Custom Purified and Recombinant Proteins Services for C6orf163
- GenScript Custom Assay Services for C6orf163
- GenScript Custom overexpressing Cell Line Services for C6orf163
- GenScript: Design CRISPR guide RNA sequences for C6orf163
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for C6orf163
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals Antibodies for C6orf163
- Novus Biologicals proteins for C6orf163
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Invitrogen Antibodies for C6orf163
- ViGene Biosciences adenoviral particle packaged cDNA for C6orf163 gene
- ViGene Biosciences lentiviral particle packaged cDNA for C6orf163 gene
- ViGene Biosciences ready-to-package AAV shRNAs for C6orf163 gene
- Search ViGene Biosciences for C6orf163
- Horizon Cell Lines for C6orf163
- Cyagen custom Knockout/knockin (KOKI) mouse models for C6orf163
- VectorBuilder custom plasmid, inducible vectors for C6orf163
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for C6orf163
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for C6orf163 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer